Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   T15_RS04080 Genome accession   NC_022665
Coordinates   812047..812886 (+) Length   279 a.a.
NCBI ID   WP_023369907.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 807047..817886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS04050 (T15_0782) - 807512..808390 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  T15_RS04055 (T15_0783) atpD 808410..809816 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  T15_RS04060 (T15_0784) - 809826..810242 (+) 417 WP_023369903.1 F0F1 ATP synthase subunit epsilon -
  T15_RS04065 (T15_0785) - 810302..810526 (+) 225 WP_012775178.1 DUF1146 family protein -
  T15_RS04070 (T15_0786) murA 810550..811833 (+) 1284 WP_012027137.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  T15_RS04075 (T15_0787) - 811826..812017 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  T15_RS04080 (T15_0788) endA 812047..812886 (+) 840 WP_023369907.1 DNA/RNA non-specific endonuclease Machinery gene
  T15_RS04085 (T15_0789) - 813073..814626 (+) 1554 WP_023369909.1 MFS transporter -
  T15_RS04090 (T15_0790) - 814683..815711 (+) 1029 WP_023369911.1 sugar kinase -
  T15_RS04095 (T15_0791) uidA 815727..817526 (+) 1800 WP_023369913.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30133.32 Da        Isoelectric Point: 6.2370

>NTDB_id=52526 T15_RS04080 WP_023369907.1 812047..812886(+) (endA) [Streptococcus suis T15]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=52526 T15_RS04080 WP_023369907.1 812047..812886(+) (endA) [Streptococcus suis T15]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGAAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAAGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAAATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGGCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCTTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595

Multiple sequence alignment