Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   T15_RS01925 Genome accession   NC_022665
Coordinates   354933..355721 (+) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 349933..360721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS01900 (T15_0349) - 350293..351252 (-) 960 WP_024381504.1 asparaginase -
  T15_RS11795 - 351322..352687 (+) 1366 Protein_333 Cof-type HAD-IIB family hydrolase -
  T15_RS01915 (T15_0352) - 352703..353155 (-) 453 WP_004195772.1 universal stress protein -
  T15_RS01920 (T15_0353) - 353310..354524 (+) 1215 WP_011921925.1 pyridoxal phosphate-dependent aminotransferase -
  T15_RS01925 (T15_0354) codY 354933..355721 (+) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  T15_RS01930 (T15_0355) - 355723..356274 (+) 552 WP_023369389.1 cysteine hydrolase family protein -
  T15_RS01935 (T15_0356) rplS 356540..356887 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  T15_RS01940 (T15_0358) - 357075..357749 (+) 675 WP_012774968.1 hydrolase -
  T15_RS01945 (T15_0359) gatC 357966..358268 (+) 303 WP_023369393.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  T15_RS01950 (T15_0360) gatA 358268..359734 (+) 1467 WP_023369395.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=52505 T15_RS01925 WP_023369388.1 354933..355721(+) (codY) [Streptococcus suis T15]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=52505 T15_RS01925 WP_023369388.1 354933..355721(+) (codY) [Streptococcus suis T15]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGATTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCATGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTGCTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496

Multiple sequence alignment