Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K5O18_RS05170 Genome accession   NZ_CP081939
Coordinates   1036494..1037843 (+) Length   449 a.a.
NCBI ID   WP_110478987.1    Uniprot ID   A0AAE5TLR8
Organism   Avibacterium paragallinarum strain p4chr1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1031494..1042843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS05145 (K5O18_05145) lrp 1031670..1032149 (+) 480 WP_110478982.1 leucine-responsive transcriptional regulator Lrp -
  K5O18_RS05150 (K5O18_05150) - 1032151..1035003 (+) 2853 WP_110478983.1 DNA translocase FtsK 4TM domain-containing protein -
  K5O18_RS05155 (K5O18_05155) lolA 1035085..1035705 (+) 621 WP_194742997.1 outer membrane lipoprotein chaperone LolA -
  K5O18_RS05160 (K5O18_05160) - 1035757..1036053 (-) 297 WP_110478985.1 HigA family addiction module antitoxin -
  K5O18_RS05165 (K5O18_05165) - 1036063..1036341 (-) 279 WP_110478986.1 type II toxin-antitoxin system RelE/ParE family toxin -
  K5O18_RS05170 (K5O18_05170) rarA 1036494..1037843 (+) 1350 WP_110478987.1 replication-associated recombination protein A Machinery gene
  K5O18_RS05175 (K5O18_05175) serS 1037917..1039206 (+) 1290 WP_110478988.1 serine--tRNA ligase -
  K5O18_RS05180 (K5O18_05180) prfA 1039410..1040492 (+) 1083 WP_110478989.1 peptide chain release factor 1 -
  K5O18_RS05195 (K5O18_05195) orn 1040913..1041461 (-) 549 WP_110478990.1 oligoribonuclease -
  K5O18_RS05200 (K5O18_05200) rsgA 1041533..1042591 (+) 1059 WP_110478991.1 small ribosomal subunit biogenesis GTPase RsgA -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50484.40 Da        Isoelectric Point: 6.0897

>NTDB_id=524702 K5O18_RS05170 WP_110478987.1 1036494..1037843(+) (rarA) [Avibacterium paragallinarum strain p4chr1]
MSNFAFDFAENDFRPLAARMRPTNLEEYYGQRHLIGVGKPLRKAIEAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTGGVKEIREAIERAKQNRLMGQRTILFVDEVHRFNKSQQDAFLPYIEDGTVTFIGATTENPSFELNNALLSRAKVY
ILKPLTPQDIEQVLQRAIEDKEKGLGNEHFVLEDNVLQLLAEYVNGDARLALNSLELMADMAEEGENGKILHRTLLTEVL
GERQARFDKQGDRFYDLISALHKSVRGSSPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRGMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYQAFNAAKKMAVESPDYDVPEHLRNAPTKLMKELGYGAEYRYAHNEENAYAA
GENYFPEALKETKFYFPTQRGMEIQISEKLEKLRQLDEKSQIQRYKLVK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=524702 K5O18_RS05170 WP_110478987.1 1036494..1037843(+) (rarA) [Avibacterium paragallinarum strain p4chr1]
ATGTCGAATTTTGCGTTTGATTTCGCTGAGAATGATTTTCGTCCGTTGGCGGCGAGAATGCGTCCTACGAATTTAGAGGA
ATATTACGGGCAACGCCATTTGATTGGTGTAGGTAAACCATTACGCAAAGCCATTGAGGCTGGGCATATTCATTCAATGA
TTTTATGGGGGCCGCCAGGGACGGGGAAGACGACCTTAGCAGAAATTATTGCACAACGCATTAATGCGGAAGTGGAACGA
ATTTCAGCGGTAACGGGGGGAGTGAAAGAAATTCGCGAAGCCATTGAGCGAGCCAAGCAAAACCGCCTGATGGGGCAACG
CACGATTTTATTTGTGGACGAAGTGCATCGTTTCAACAAAAGCCAGCAAGATGCGTTTTTGCCCTACATTGAAGACGGCA
CGGTCACTTTTATTGGCGCAACCACAGAAAATCCCTCCTTTGAGCTGAACAACGCCTTGCTTTCTCGTGCCAAAGTGTAC
ATTTTAAAACCGCTCACGCCCCAAGATATTGAGCAAGTTTTGCAGCGTGCTATAGAGGACAAAGAGAAAGGGCTAGGCAA
TGAACATTTTGTGCTGGAAGATAATGTATTGCAGTTGCTGGCAGAATATGTGAATGGCGATGCCCGTTTGGCCTTGAACA
GCCTTGAATTAATGGCAGATATGGCGGAAGAGGGAGAAAATGGCAAAATTTTACACCGCACTTTATTAACGGAAGTGCTG
GGGGAACGACAAGCTCGTTTTGATAAGCAGGGGGATCGTTTTTACGATCTGATTTCCGCTTTGCATAAATCCGTGCGAGG
TTCATCGCCTGATGCGGCGTTATATTGGTATGCACGTATTCTCACCGCAGGGGGTGATCCGCTTTATGTGGCACGGCGGT
TGCTTGCGATTGCGTCGGAAGATGTGGGCAATGCTGATCCGCGAGGAATGCAAGTGGCTCTTGCCGCGTGGGATTGCTTC
ACCCGTGTGGGGGCGGCAGAGGGGGAACGCGCCATTGCCCAAGCGATCGTCTATTTAGCGGTTGCACCAAAAAGTAATGC
GGTGTATCAAGCCTTTAACGCTGCGAAGAAAATGGCAGTGGAAAGCCCTGATTATGATGTACCAGAGCATTTACGCAATG
CACCAACGAAGTTGATGAAAGAATTGGGCTATGGGGCGGAATATCGTTACGCTCATAATGAAGAAAATGCCTATGCGGCG
GGAGAAAATTATTTTCCTGAAGCCTTGAAAGAAACGAAATTTTATTTTCCAACGCAACGAGGAATGGAAATTCAGATCAG
TGAGAAATTAGAAAAATTACGTCAACTTGACGAAAAAAGCCAAATTCAACGCTATAAACTCGTCAAGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-163)

AAA C-terminal domain (AAA_assoc_2)

(187-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAE5TLR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.876

91.537

0.374