Detailed information NTG0524648

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: JHX84_RS12790
• Genome accession: NZ_CP067043
• Coordinates: 2479667..2482045 (+)
• Length: 792 a.a.
• NCBI ID: WP_025853055.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 19573-3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2474667..2487045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHX84_RS12765 (JHX84_12760)	-	2474751..2476019 (-)	1269	WP_032856906.1	replication-associated recombination protein A	-
JHX84_RS12770 (JHX84_12765)	cymR	2476214..2476630 (+)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
JHX84_RS12775 (JHX84_12770)	-	2476649..2477788 (+)	1140	WP_003152731.1	cysteine desulfurase family protein	-
JHX84_RS12780 (JHX84_12775)	mnmA	2477825..2478940 (+)	1116	WP_024085647.1	tRNA 2-thiouridine(34) synthase MnmA	-
JHX84_RS12785 (JHX84_12780)	-	2479028..2479648 (+)	621	WP_088005508.1	lipopolysaccharide assembly protein LapB	-
JHX84_RS12790 (JHX84_12785)	recD2	2479667..2482045 (+)	2379	WP_025853055.1	ATP-dependent RecD-like DNA helicase	Machinery gene
JHX84_RS12795 (JHX84_12790)	-	2482164..2482622 (+)	459	WP_003152735.1	PRC-barrel domain-containing protein	-
JHX84_RS12800 (JHX84_12795)	-	2482635..2482826 (+)	192	WP_003152738.1	hypothetical protein	-
JHX84_RS12805 (JHX84_12800)	-	2482848..2482979 (+)	132	WP_003152741.1	YrzQ family protein	-
JHX84_RS12810 (JHX84_12805)	-	2483015..2483671 (-)	657	WP_161503467.1	amino acid ABC transporter permease	-
JHX84_RS12815 (JHX84_12810)	-	2483689..2484339 (-)	651	WP_003152744.1	amino acid ABC transporter permease	-
JHX84_RS12820 (JHX84_12815)	-	2484396..2485223 (-)	828	WP_161503468.1	transporter substrate-binding domain-containing protein	-
JHX84_RS12825 (JHX84_12820)	-	2485244..2485972 (-)	729	WP_003152746.1	amino acid ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88350.01 Da
• Isoelectric Point: 4.9490

>NTDB_id=524648 JHX84_RS12790 WP_025853055.1 2479667..2482045(+) (recD2) [Bacillus velezensis strain 19573-3]
MDQLNIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILSDASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIETKQLIINTQTLLNQSAEGGRVTEMDAADGIIALGESKDIVIEGERCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMNVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSSQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=524648 JHX84_RS12790 WP_025853055.1 2479667..2482045(+) (recD2) [Bacillus velezensis strain 19573-3]
GTGGATCAGCTGAACATCGAAGAACAGCCGTATGTAAAAGGCGTCATTCATACGGTCATTTATCATAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACCTACACATTTTACGGAAAAACTGCCACGCATCCTAAGTTCGGCCTGCAATTTCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGAATCATTCACTATTTATCAAGTGATTTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTCAATAAAATTCTGTCGGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCGAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGTCTTGAGCAGATT
ATGATCTCTCTGAACCAATACGGTTTCGGGCCCCAGCTATCCATGAAAATATATCAGGCCTACGAAACGGAAACCTTGGA
GAAAATTCAGGAAAATCCTTATCAGCTTGTAAAAGACGTTGAGGGCATCGGCTTTGTGAAAGCTGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGAAACCACCCGGAGCGGATCAAAGCGGCTATCTTATATACGATTGAATCGACCTGTCTTTCAGAG
GGCCACACGTACATAGAAACGAAGCAGCTGATTATCAATACGCAAACGCTTCTGAATCAGTCAGCTGAAGGCGGCCGCGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGGGAGAGTAAGGATATCGTCATCGAAGGAGAGCGCTGCTATT
TTCCGTCCTTGTTTTACGCGGAACAAAACGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCACTCGGTGAACTGGAAGAACGGATGAATGTTCAATACGCACCAAGCCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCACCGATGCTTTTACTGACCGGGGGACCTGGAACGGGGAAAACGACCGTTATTAAAG
GAATCGTGGAATTATACAGTGAACTGCACGGCGTATCCCTTGACCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGTGAATCTACGGGTCTGCCGGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAACGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATCTGGCTCGCCAGCCATTTGTTTAAGGCGCTTCCTAAGCACATTCAGCTCATTGTTGTCGGTGAT
GAAGACCAGCTTCCTTCAGTAGGACCGGGGCAGGTGCTCAGAGATCTTTTGGCTTCTGAAGTGCTGCCGACCGTGCGCCT
GACAGATATTTACCGTCAGGCTGAAGGATCATCCATTGTGGAACTTGCCCATGATATGAAAAAAGGGCTGCTTCCAAAGG
GGCTGACCGCGCCGACAAAGGACCGCTCATTTATCCGCTGTAATTCTTCACAGATTAAAGAAGTCGTGGATCAGGTCGTC
TCGAACGCGTTAAAAAAGGGGTATACCTCCAGAGATATTCAAGTGCTTGCCCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAACATGCTTCTTCAGGACATCATGAATCCGCCTAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGCGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGCAACGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCACGCTTACTGCTGTTCCATTCATAAGTCGCAGGGGAGCGAATTCCCGATTGTCG
TCCTGCCTGTCGTCAAAGGCTACTATCGAATGCTCAGGAGAAATCTGCTTTATACCGCCATTACAAGAGCGAAAAAATTT
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCCCTGCAAAAAGAGCTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATCACGCCTTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.875	99.874	0.888