Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6T43_RS01320 Genome accession   NZ_CP081934
Coordinates   282962..284239 (+) Length   425 a.a.
NCBI ID   WP_064970435.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190507E1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 277962..289239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T43_RS01295 (K6T43_01295) - 278753..279430 (-) 678 WP_004917711.1 DedA family protein -
  K6T43_RS01300 (K6T43_01300) prfB 279508..280620 (-) 1113 WP_064970451.1 peptide chain release factor 2 -
  K6T43_RS01305 (K6T43_01305) lgt 280781..281632 (-) 852 WP_064970434.1 prolipoprotein diacylglyceryl transferase -
  K6T43_RS01310 (K6T43_01310) yidD 281640..281894 (-) 255 WP_064969823.1 membrane protein insertion efficiency factor YidD -
  K6T43_RS01315 (K6T43_01315) - 281966..282844 (-) 879 WP_127919813.1 IS982-like element ISRa1 family transposase -
  K6T43_RS01320 (K6T43_01320) rarA 282962..284239 (+) 1278 WP_064970435.1 replication-associated recombination protein A Machinery gene
  K6T43_RS01325 (K6T43_01325) - 284236..284847 (-) 612 WP_064970436.1 L-threonylcarbamoyladenylate synthase -
  K6T43_RS01330 (K6T43_01330) - 284831..285637 (-) 807 WP_064970437.1 lysophospholipid acyltransferase family protein -
  K6T43_RS01335 (K6T43_01335) - 285666..286286 (-) 621 WP_038693277.1 NUDIX hydrolase -
  K6T43_RS01340 (K6T43_01340) - 286290..286982 (-) 693 WP_064970438.1 potassium channel family protein -
  K6T43_RS01345 (K6T43_01345) - 286989..288737 (-) 1749 WP_154212617.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47506.20 Da        Isoelectric Point: 6.5101

>NTDB_id=524596 K6T43_RS01320 WP_064970435.1 282962..284239(+) (rarA) [Riemerella anatipestifer strain 20190507E1-1]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDEAQKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVVLIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSEAILKILQETVPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEAMAMAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGNFVPQEFLPEELSGVS
FYCSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=524596 K6T43_RS01320 WP_064970435.1 282962..284239(+) (rarA) [Riemerella anatipestifer strain 20190507E1-1]
TTGAATTCAAATATTCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTGAAA
GAGGTAAGAGAAGTGATAGATGAGGCCCAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTATTTATAGATGAAAT
TCATAGATTTAACAAGTCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGGTTTTGATAGGAGCAACTA
CCGAAAATCCTAGCTTTGAGGTGGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAACTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGGCTATTCTGAAAATTTTACAAGAAACCGTACCTGTTTATGATAAAAATGGTGAG
CAACATTATGATGTAATTTCAGCTTTTATTAAATCTATTAGAGGGAGTGATGTTAATGCCGCTTTGTACTGGCTAGGGAG
AATGCTCGTGGGAGGCGAAGATATTAAATTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGTTTGGCTA
ACCCTAACGCTCTCACAATGGCTAACAGTTGTTTTCAATCAGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCTTCACCTAAGAGTAATTCGGCGTATCAAGCCATTAATGAGGCAATGGCAATGGC
GAAAAAAACAGCTCATTTGCCCGTGCCATTGCACTTAAGAAATGCTCCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTATGAGGGAAATTTTGTGCCACAAGAATTTCTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATTGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAATGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(44-155)

AAA C-terminal domain (AAA_assoc_2)

(187-254)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.148

95.529

0.384