Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   I6H46_RS10155 Genome accession   NZ_CP067016
Coordinates   1812081..1812839 (-) Length   252 a.a.
NCBI ID   WP_325100624.1    Uniprot ID   -
Organism   Anaerococcus obesiensis strain FDAARGOS_989     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807081..1817839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H46_RS09130 (I6H46_09130) nhaC 1807674..1809227 (-) 1554 WP_019117512.1 Na+/H+ antiporter NhaC -
  I6H46_RS09135 (I6H46_09135) - 1809630..1810043 (-) 414 WP_019117511.1 DUF2871 domain-containing protein -
  I6H46_RS09140 (I6H46_09140) - 1810055..1812088 (-) 2034 WP_200225854.1 ABC transporter ATP-binding protein -
  I6H46_RS10155 rcrP 1812081..1812839 (-) 759 WP_325100624.1 ATP-binding cassette domain-containing protein Regulator
  I6H46_RS10160 - 1812850..1813842 (-) 993 WP_234287355.1 ABC transporter permease -
  I6H46_RS09150 (I6H46_09150) - 1813826..1814299 (-) 474 WP_200225856.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6H46_RS09155 (I6H46_09155) - 1814418..1814900 (-) 483 WP_019117508.1 thioesterase -
  I6H46_RS09160 (I6H46_09160) - 1814910..1815950 (-) 1041 WP_019117507.1 hypothetical protein -
  I6H46_RS09165 (I6H46_09165) - 1816077..1816565 (-) 489 WP_019117506.1 prolyl-tRNA synthetase associated domain-containing protein -
  I6H46_RS09170 (I6H46_09170) - 1816715..1817233 (-) 519 WP_019117505.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 27989.66 Da        Isoelectric Point: 4.6853

>NTDB_id=524439 I6H46_RS10155 WP_325100624.1 1812081..1812839(-) (rcrP) [Anaerococcus obesiensis strain FDAARGOS_989]
MKGKVEFQNVYFSYPDAEEAVLENISFTANRGETVAFIGSTGSGKSTLINLIPRFYDVSGGKILIDGIDVRDYPLKDLYN
KLGYASQKAFLFNESIENNIDFGEGLKEISDKDIEKALDIAQASEFVNKMDDGKKSMIAQSGTNISGGQKQRLSIARAIA
KDPEIFIFDDSFSALDYKTDAILRNELKKSTENSTKLIVAQRIGTIMNADEIIVLDQGKIVGKGRHKELLKNCDVYREIA
LSQLSEEELYNG

Nucleotide


Download         Length: 759 bp        

>NTDB_id=524439 I6H46_RS10155 WP_325100624.1 1812081..1812839(-) (rcrP) [Anaerococcus obesiensis strain FDAARGOS_989]
ATAAAAGGAAAAGTAGAATTTCAAAATGTATATTTCTCATATCCTGATGCAGAAGAAGCAGTTTTAGAAAATATTTCTTT
TACAGCAAACAGGGGAGAAACTGTTGCCTTTATCGGCTCAACTGGTTCAGGAAAATCTACTTTGATAAATCTTATTCCAA
GATTTTACGATGTAAGTGGCGGAAAAATTTTAATAGATGGGATTGATGTTAGAGATTATCCATTAAAAGATTTATATAAT
AAATTAGGCTACGCTTCACAAAAAGCATTTTTGTTTAATGAAAGCATAGAAAATAATATAGATTTTGGAGAAGGACTAAA
AGAAATTAGTGATAAAGATATAGAAAAAGCTTTGGACATTGCTCAAGCTAGCGAATTTGTAAATAAAATGGACGATGGCA
AAAAATCTATGATAGCCCAAAGTGGTACAAATATTTCAGGAGGACAAAAACAAAGATTATCTATTGCTAGAGCCATAGCA
AAAGATCCTGAAATATTTATCTTTGATGATTCATTTTCAGCACTTGACTACAAAACAGATGCGATTTTGAGAAATGAATT
AAAAAAATCTACAGAAAATTCTACCAAATTAATAGTTGCTCAAAGGATTGGAACTATTATGAATGCAGACGAAATAATAG
TTTTAGATCAAGGAAAAATAGTTGGAAAAGGACGCCACAAAGAATTATTAAAAAACTGTGATGTTTATAGAGAAATTGCT
CTATCCCAACTAAGTGAGGAGGAATTATACAATGGCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(22-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

63.095

100

0.631