Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6T41_RS04105 Genome accession   NZ_CP081924
Coordinates   877512..878096 (+) Length   194 a.a.
NCBI ID   WP_064964781.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190212E1-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 872512..883096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T41_RS04095 (K6T41_04095) - 872962..875892 (+) 2931 WP_214202756.1 SusC/RagA family TonB-linked outer membrane protein -
  K6T41_RS04100 (K6T41_04100) - 875907..877343 (+) 1437 WP_214202755.1 RagB/SusD family nutrient uptake outer membrane protein -
  K6T41_RS04105 (K6T41_04105) ruvA 877512..878096 (+) 585 WP_064964781.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21405.94 Da        Isoelectric Point: 6.4970

>NTDB_id=524328 K6T41_RS04105 WP_064964781.1 877512..878096(+) (ruvA) [Riemerella anatipestifer strain 20190212E1-4]
MIYSLRGIVQELSPTHLVIETGGIGYFVNVSVNTSKHFSIGKESLIYTQQIIREDAHLLYGFSELKEKEMFNLLISVNGV
GPASAMIMLSSLELREIAQAILSGNSAVLQKVKGIGTKTAQRIIIDLKDKVLHFGADESDISTVIDNKVKEESLSALEVL
GIPKKMSEKLADKILKQNPEIQTEDLVKQILKNI

Nucleotide


Download         Length: 585 bp        

>NTDB_id=524328 K6T41_RS04105 WP_064964781.1 877512..878096(+) (ruvA) [Riemerella anatipestifer strain 20190212E1-4]
ATGATTTACTCTCTACGAGGTATCGTTCAGGAGCTTAGCCCAACCCATTTAGTTATAGAAACTGGCGGCATAGGCTACTT
TGTAAACGTTAGTGTAAACACTTCTAAACACTTCTCCATTGGGAAAGAATCTTTAATCTACACACAGCAAATCATTCGAG
AAGACGCTCACTTATTGTACGGTTTTTCGGAGCTAAAAGAGAAAGAAATGTTTAACCTACTTATTTCTGTAAATGGTGTA
GGACCAGCCTCTGCTATGATTATGCTTTCCTCACTAGAATTAAGGGAAATAGCACAAGCTATACTATCTGGAAATAGTGC
TGTATTACAAAAAGTAAAAGGTATAGGCACTAAAACTGCACAACGAATTATCATTGATTTAAAAGATAAAGTACTACATT
TTGGAGCAGATGAATCTGATATTTCTACCGTTATTGATAATAAAGTGAAAGAAGAATCGTTATCTGCATTAGAAGTTTTA
GGAATTCCTAAAAAAATGTCAGAAAAGTTAGCAGACAAAATTTTGAAACAAAATCCAGAAATACAAACGGAAGATTTAGT
AAAACAAATTTTGAAAAATATTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(149-193)

Helix-hairpin-helix domain (HHH_5)

(71-129)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.784

100

0.376