Detailed information NTG0052384

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: U471_RS12265
• Genome accession: NC_022653
• Coordinates: 2580043..2581311 (+)
• Length: 422 a.a.
• NCBI ID: WP_012118079.1
• Uniprot ID: A7Z748
• Organism: Bacillus amyloliquefaciens CC178
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2575043..2586311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U471_RS12245 (U471_25530)	-	2576414..2577034 (-)	621	WP_088461189.1	tetratricopeptide repeat protein	-
U471_RS12250 (U471_25540)	mnmA	2577122..2578237 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
U471_RS12255 (U471_25550)	-	2578274..2579413 (-)	1140	WP_012118078.1	cysteine desulfurase family protein	-
U471_RS12260 (U471_25560)	cymR	2579432..2579848 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
U471_RS12265 (U471_25570)	rarA	2580043..2581311 (+)	1269	WP_012118079.1	replication-associated recombination protein A	Machinery gene
U471_RS12270 (U471_25590)	-	2581428..2582192 (-)	765	WP_012118080.1	ThiF family adenylyltransferase	-
U471_RS12275 (U471_25600)	aspS	2582518..2584296 (-)	1779	WP_012118081.1	aspartate--tRNA ligase	-
U471_RS12280 (U471_25610)	hisS	2584311..2585585 (-)	1275	WP_012118082.1	histidine--tRNA ligase	-
U471_RS19900 (U471_25630)	-	2585942..2586112 (-)	171	WP_012118083.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46675.54 Da
• Isoelectric Point: 7.9149

>NTDB_id=52384 U471_RS12265 WP_012118079.1 2580043..2581311(+) (rarA) [Bacillus amyloliquefaciens CC178]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPEPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=52384 U471_RS12265 WP_012118079.1 2580043..2581311(+) (rarA) [Bacillus amyloliquefaciens CC178]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAGGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGGAAAGA
GCGCTCACAGATGAACACCGGGGGCTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCGCAAGG
GTGCGGAGGAGACGTCCGCTCAGCTTTGAACGCACTTGAGCTTGCCGTCCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAGACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGTGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGCGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACAGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCTGAACCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

3D structure

• AlphaFold DB: A7Z748

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.974	99.763	0.908