Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K2224_RS08695 Genome accession   NZ_CP081496
Coordinates   1955964..1957376 (-) Length   470 a.a.
NCBI ID   WP_221906019.1    Uniprot ID   -
Organism   Streptomyces sp. BHT-5-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1950964..1962376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - radA 1955964..1957376 (-) 1413 - - Machinery gene

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49632.79 Da        Isoelectric Point: 7.4056

>NTDB_id=522805 K2224_RS08695 WP_221906019.1 1955964..1957376(-) (radA) [Streptomyces sp. BHT-5-2]
MATRKSSAKERPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGTPAVRTTAPGRVTTAALPIGQVDGRQATARPTGVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASAEHRTLYVTGEESASQVRLRADRIGALDEDLYLAAETDLSAV
LGHLDSVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAARLGFTHALVPTDPGKIPDGMRVLEVGDVGQALSVLPKRVRREAPREEEARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=522805 K2224_RS08695 WP_221906019.1 1955964..1957376(-) (radA) [Streptomyces sp. BHT-5-2]
ATGGCAACTCGCAAATCGTCGGCCAAGGAGCGCCCCTCGTACCGCTGCACCGAGTGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTTCGGCGGCACCCCCGCGGTGCGCACCACCGCGCCCG
GCCGGGTCACCACCGCCGCCCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCCCGACCGGCGTGCCCGAG
CTGGACCGCGTCCTGGGCGGCGGGCTGGTCCCCGGCGCGGTGGTGCTGCTGGCCGGCGAGCCCGGCGTCGGCAAGTCCAC
CCTCCTGTTGGACGTCGCCGCCAAGGCGGCCTCCGCCGAGCACCGCACGCTCTATGTGACGGGCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGCGCCGACCGCATCGGCGCCCTCGACGAGGATCTCTATCTGGCGGCCGAGACCGACCTCTCCGCCGTC
CTCGGCCATCTGGACAGCGTCAAGCCCTCGCTGCTGATCATGGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGG
CGCCCCGGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGC
TCCTGGTCGGCCACGTCACCAAGGACGGTGCGATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTCGACGTCGTCCTGCAC
TTCGAGGGCGACCGGCACGCCCGGCTCCGCCTCGTCCGCGGCGTGAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTGACCCGCCGCGACGAGCCGGTGC
CCGGCACCTGCCTGACGGTCACCCTTGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTGACCGTCGACTCCCAG
ATCCCCTCCCCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCGCCCTCGGCAAGCGCGACATCTACAGCGCCACGGTCGGCGGGGTGAAGCTCAGCGAGCCGGCCGCGGACC
TCGCGGTCGCCCTCGCCCTGGCCAGCGCGGCCAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTCGGG
CTGGCCGGCGAGGTCCGGCGGGTCACCGGCGTGCAGCGCCGCCTGGCGGAGGCGGCCCGGCTCGGCTTCACACACGCCCT
GGTTCCCACCGACCCCGGCAAGATCCCCGACGGAATGCGGGTCCTGGAGGTCGGCGACGTCGGCCAGGCACTGTCCGTGC
TGCCCAAGCGGGTCCGCCGGGAGGCCCCGCGGGAGGAGGAAGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(79-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

42.92

96.17

0.413
  radA Streptococcus pneumoniae D39

42.92

96.17

0.413
  radA Streptococcus pneumoniae R6

42.92

96.17

0.413
  radA Streptococcus pneumoniae Rx1

42.92

96.17

0.413
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.17

0.413
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404
  radA Streptococcus mitis SK321

44.289

91.277

0.404