Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   K2224_RS03825 Genome accession   NZ_CP081496
Coordinates   911235..912236 (-) Length   333 a.a.
NCBI ID   WP_221905254.1    Uniprot ID   -
Organism   Streptomyces sp. BHT-5-2     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 906235..917236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rpoS 911235..912236 (-) 1002 - - Regulator

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36876.24 Da        Isoelectric Point: 4.6644

>NTDB_id=522795 K2224_RS03825 WP_221905254.1 911235..912236(-) (rpoS) [Streptomyces sp. BHT-5-2]
MATRAVARRQASTTGSGEANSVRAAGGDIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQILDGEITDTDAA
GASREELEALAAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPEEVAGELGSTAARVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDQRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=522795 K2224_RS03825 WP_221905254.1 911235..912236(-) (rpoS) [Streptomyces sp. BHT-5-2]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGGCCAGCACCACCGGCTCTGGCGAGGCCAACAGCGTTCGCGCAGCAGGCGG
AGACATCGCCGACCGCGACCTGGTGGGCATGTATCTCGACGAGATCGCGCGCACGCCCCTGCTGGACGCCGCCAAGGAGG
TGGAGCTGTCGCAGACCATCGAGGCCGGGGTCTACGCCCAGCAGATCCTGGACGGCGAGATCACCGACACCGACGCCGCG
GGTGCGAGCCGCGAGGAGCTCGAAGCGCTCGCCGCCGAGGGCGAGCGGGCCAAGGACGTCTTCATCCGGTCCAACCTCCG
TCTGGTCGTCGCCGTGGCCCGCCGCTACCCGCGCTCCGGCCTCCCCCTGCTGGATCTGATCCAGGAGGGCAACGCCGGCC
TGGTGCGCGCCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGGCTCCCCGTCCACCTCGTGGAGGAGCTCGGCCGGATCCGCCG
GGTCCAGCGCGAGTTCAACCGCGAGAACGGCCGCGACCCGGAGCCCGAGGAGGTGGCCGGCGAGCTGGGTTCCACGGCCG
CCCGCGTCACCGACGTCCTGGACTGGGCCCGCGACCCGGTCAGTCTCAACATGTCGGTGGACGACGACGGCGACACCCAG
TTCGGCGACCTGCTGGAGGACACCTCCGCCGCCTCCCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGA
GGATCTGATCGACCGCCTCGACCAGCGCACCGCGTCGATCATCAAGGCGCGCTACGGCATCGAGGACGGCCGCGAGCGCA
CGCTGACGGAGGTCGGCAAGCAGCACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGCGGATGGCGCGCGACACCGGGTTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70, region 4 (Sigma70_r4)

(270-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 3 (Sigma70_r3)

(180-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.199

90.39

0.363