Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K5B69_RS26105 Genome accession   NZ_CP081346
Coordinates   5525273..5525698 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain SE5419     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5520273..5530698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5B69_RS26090 (K5B69_26090) pilX 5520837..5521424 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  K5B69_RS26095 (K5B69_26095) pilY1 5521436..5524927 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  K5B69_RS26100 (K5B69_26100) pilY2 5524929..5525276 (+) 348 WP_028681207.1 type 4a fimbrial biogenesis protein PilY2 -
  K5B69_RS26105 (K5B69_26105) comF 5525273..5525698 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  K5B69_RS26110 (K5B69_26110) ispH 5525745..5526689 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K5B69_RS26115 (K5B69_26115) fkpB 5526775..5527215 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  K5B69_RS26120 (K5B69_26120) lspA 5527208..5527717 (-) 510 WP_003102615.1 signal peptidase II -
  K5B69_RS26125 (K5B69_26125) ileS 5527710..5530541 (-) 2832 WP_028681208.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=522297 K5B69_RS26105 WP_003094721.1 5525273..5525698(+) (comF) [Pseudomonas aeruginosa strain SE5419]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=522297 K5B69_RS26105 WP_003094721.1 5525273..5525698(+) (comF) [Pseudomonas aeruginosa strain SE5419]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383