Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   JG534_RS06860 Genome accession   NZ_CP066745
Coordinates   1331483..1331998 (-) Length   171 a.a.
NCBI ID   WP_002868456.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1326483..1336998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG534_RS06845 (JG534_06845) - 1326588..1328402 (-) 1815 WP_151220691.1 motility associated factor glycosyltransferase family protein -
  JG534_RS06850 (JG534_06850) - 1328399..1330222 (-) 1824 WP_052773884.1 motility associated factor glycosyltransferase family protein -
  JG534_RS06855 (JG534_06855) - 1330233..1331483 (-) 1251 WP_002799732.1 DUF2920 family protein -
  JG534_RS06860 (JG534_06860) ctsG 1331483..1331998 (-) 516 WP_002868456.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JG534_RS06865 (JG534_06865) tsaD 1331999..1333006 (-) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  JG534_RS06870 (JG534_06870) - 1333003..1334398 (-) 1396 Protein_1338 M99 family carboxypeptidase catalytic domain-containing protein -
  JG534_RS06875 (JG534_06875) dxr 1334400..1335470 (-) 1071 WP_002868459.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  JG534_RS06880 (JG534_06880) cdsA 1335467..1336192 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  JG534_RS06885 (JG534_06885) - 1336201..1336539 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18704.64 Da        Isoelectric Point: 6.4682

>NTDB_id=522287 JG534_RS06860 WP_002868456.1 1331483..1331998(-) (ctsG) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGILSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=522287 JG534_RS06860 WP_002868456.1 1331483..1331998(-) (ctsG) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTTAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936