Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   K3T18_RS28335 Genome accession   NZ_CP081287
Coordinates   6057891..6058415 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F092021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6052891..6063415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3T18_RS28320 (K3T18_28320) aroB 6054007..6055113 (-) 1107 WP_028681386.1 3-dehydroquinate synthase -
  K3T18_RS28325 (K3T18_28325) aroK 6055163..6055681 (-) 519 WP_003095833.1 shikimate kinase AroK -
  K3T18_RS28330 (K3T18_28330) pilQ 6055693..6057837 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  K3T18_RS28335 (K3T18_28335) comL/pilP 6057891..6058415 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  K3T18_RS28340 (K3T18_28340) pilO 6058412..6059035 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  K3T18_RS28345 (K3T18_28345) pilN 6059032..6059628 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  K3T18_RS28350 (K3T18_28350) pilM 6059628..6060692 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  K3T18_RS28355 (K3T18_28355) - 6060877..6063348 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=522019 K3T18_RS28335 WP_003095836.1 6057891..6058415(-) (comL/pilP) [Pseudomonas aeruginosa strain F092021]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=522019 K3T18_RS28335 WP_003095836.1 6057891..6058415(-) (comL/pilP) [Pseudomonas aeruginosa strain F092021]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362