Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K3T18_RS25720 Genome accession   NZ_CP081287
Coordinates   5473056..5473481 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F092021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5468056..5478481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3T18_RS25705 (K3T18_25705) pilX 5468620..5469207 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  K3T18_RS25710 (K3T18_25710) pilY1 5469219..5472710 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  K3T18_RS25715 (K3T18_25715) pilY2 5472712..5473059 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  K3T18_RS25720 (K3T18_25720) comF 5473056..5473481 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  K3T18_RS25725 (K3T18_25725) ispH 5473528..5474472 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K3T18_RS25730 (K3T18_25730) fkpB 5474558..5474998 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  K3T18_RS25735 (K3T18_25735) lspA 5474991..5475500 (-) 510 WP_003094728.1 signal peptidase II -
  K3T18_RS25740 (K3T18_25740) ileS 5475493..5478324 (-) 2832 WP_221345447.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=522013 K3T18_RS25720 WP_003094721.1 5473056..5473481(+) (comF) [Pseudomonas aeruginosa strain F092021]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=522013 K3T18_RS25720 WP_003094721.1 5473056..5473481(+) (comF) [Pseudomonas aeruginosa strain F092021]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383