Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGZ06_RS11630 Genome accession   NZ_CP066702
Coordinates   2479480..2479986 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain HSP138     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2474480..2484986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ06_RS12145 - 2475399..2475530 (-) 132 WP_015728521.1 hypothetical protein -
  JGZ06_RS11615 (JGZ06_11615) - 2475699..2477690 (+) 1992 WP_199273501.1 catalase -
  JGZ06_RS12095 - 2477904..2478278 (-) 375 WP_157980673.1 Abi family protein -
  JGZ06_RS12100 - 2478275..2478415 (-) 141 WP_233275704.1 Abi family protein -
  JGZ06_RS12105 - 2478412..2478993 (-) 582 WP_233275663.1 Abi family protein -
  JGZ06_RS11625 (JGZ06_11625) rpsR 2479184..2479426 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JGZ06_RS11630 (JGZ06_11630) ssbA 2479480..2479986 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  JGZ06_RS11635 (JGZ06_11635) rpsF 2480009..2480305 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JGZ06_RS11640 (JGZ06_11640) sbi 2480642..2482132 (+) 1491 WP_063284542.1 Ig-binding surface protein Sbi/SpsK -
  JGZ06_RS11645 (JGZ06_11645) - 2482186..2482995 (-) 810 WP_037541946.1 ABC transporter permease subunit -
  JGZ06_RS11650 (JGZ06_11650) - 2482988..2483923 (-) 936 WP_014614924.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=521656 JGZ06_RS11630 WP_014614920.1 2479480..2479986(-) (ssbA) [Staphylococcus pseudintermedius strain HSP138]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=521656 JGZ06_RS11630 WP_014614920.1 2479480..2479986(-) (ssbA) [Staphylococcus pseudintermedius strain HSP138]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGGAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAATGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381