Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K3830_RS17980 Genome accession   NZ_CP081009
Coordinates   3757853..3758617 (+) Length   254 a.a.
NCBI ID   WP_001136229.1    Uniprot ID   B7L5T2
Organism   Escherichia coli strain Stbl4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3752853..3763617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3830_RS17960 (K3830_17960) acpT 3753807..3754394 (+) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -
  K3830_RS17965 (K3830_17965) nikA 3754505..3756079 (+) 1575 WP_000953361.1 nickel ABC transporter substrate-binding protein -
  K3830_RS17970 (K3830_17970) nikB 3756079..3757023 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  K3830_RS17975 (K3830_17975) nikC 3757020..3757853 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  K3830_RS17980 (K3830_17980) amiE 3757853..3758617 (+) 765 WP_001136229.1 nickel import ATP-binding protein NikD Regulator
  K3830_RS17985 (K3830_17985) nikE 3758614..3759420 (+) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  K3830_RS17990 (K3830_17990) nikR 3759426..3759827 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  K3830_RS17995 (K3830_17995) - 3760030..3760248 (+) 219 Protein_3554 hypothetical protein -
  K3830_RS18000 (K3830_18000) - 3760269..3762080 (-) 1812 Protein_3555 DEAD/DEAH box helicase -
  K3830_RS18005 (K3830_18005) yjiT 3762077..3763585 (-) 1509 Protein_3556 protein YjiT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26820.38 Da        Isoelectric Point: 6.3761

>NTDB_id=521656 K3830_RS17980 WP_001136229.1 3757853..3758617(+) (amiE) [Escherichia coli strain Stbl4]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=521656 K3830_RS17980 WP_001136229.1 3757853..3758617(+) (amiE) [Escherichia coli strain Stbl4]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L5T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398