Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   JFL55_RS08880 Genome accession   NZ_CP066564
Coordinates   1903645..1904172 (-) Length   175 a.a.
NCBI ID   WP_011608418.1    Uniprot ID   A0A9Q6P3A6
Organism   Histophilus somni strain ASc-MMNZ-VFA-69     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1898645..1909172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL55_RS08865 (JFL55_08865) - 1901938..1902255 (-) 318 WP_012340547.1 DUF5374 domain-containing protein -
  JFL55_RS08870 (JFL55_08870) - 1902236..1902916 (-) 681 WP_011608420.1 DUF2572 family protein -
  JFL55_RS08875 (JFL55_08875) - 1902919..1903596 (-) 678 WP_080514398.1 type II secretion system protein J -
  JFL55_RS08880 (JFL55_08880) comN 1903645..1904172 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL55_RS08900 (JFL55_08900) pal 1904847..1905302 (-) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  JFL55_RS08905 (JFL55_08905) tolB 1905312..1906616 (-) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -
  JFL55_RS08910 (JFL55_08910) tolA 1906644..1907699 (-) 1056 WP_012340495.1 cell envelope integrity protein TolA -
  JFL55_RS08915 (JFL55_08915) tolR 1907718..1908140 (-) 423 WP_011608414.1 colicin uptake protein TolR -
  JFL55_RS08920 (JFL55_08920) tolQ 1908208..1908891 (-) 684 WP_012340477.1 protein TolQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20468.96 Da        Isoelectric Point: 9.6079

>NTDB_id=520962 JFL55_RS08880 WP_011608418.1 1903645..1904172(-) (comN) [Histophilus somni strain ASc-MMNZ-VFA-69]
MKALKGFTLLEILIVLLIISMTVTFSFPMWQTANTKMILEKEQNKLYIFIRELQARVENSNDIWFLIANRDLVSKRWCLV
AQPKNTDICDCLNPRSCNRNIPMKFYYPYFADKTMLISKVYYPREMTRLNGTRNTSTTTCFVLQSDQQRTVFSFFNVGSL
KLKGYQSLSACVNDH

Nucleotide


Download         Length: 528 bp        

>NTDB_id=520962 JFL55_RS08880 WP_011608418.1 1903645..1904172(-) (comN) [Histophilus somni strain ASc-MMNZ-VFA-69]
ATGAAAGCATTAAAGGGGTTTACTCTATTAGAAATATTGATTGTTTTACTGATTATCAGTATGACAGTAACATTTTCTTT
TCCCATGTGGCAAACAGCAAATACAAAAATGATTTTAGAAAAAGAGCAAAATAAACTCTATATTTTCATAAGGGAGCTAC
AAGCTCGAGTTGAAAATTCTAATGATATTTGGTTTTTAATTGCTAATCGTGATTTAGTGAGTAAGCGTTGGTGCCTGGTT
GCACAACCAAAAAACACAGATATATGTGATTGTTTAAATCCTCGCAGCTGTAATAGAAATATTCCGATGAAATTTTATTA
TCCTTATTTTGCAGATAAAACCATGTTAATCAGCAAAGTTTATTATCCTAGAGAAATGACTAGATTAAATGGTACAAGGA
ATACAAGTACGACGACTTGTTTTGTGTTGCAATCTGATCAGCAAAGAACAGTATTTTCGTTTTTTAATGTAGGATCTTTA
AAACTTAAAGGTTACCAATCGTTAAGTGCTTGCGTGAATGATCATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

53.293

95.429

0.509