Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   JFL54_RS01500 Genome accession   NZ_CP066563
Coordinates   279309..279836 (+) Length   175 a.a.
NCBI ID   WP_011608418.1    Uniprot ID   A0A9Q6P3A6
Organism   Histophilus somni strain ASc-MMNZ-VFA-075     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274309..284836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL54_RS01460 (JFL54_01460) tolQ 274591..275274 (+) 684 WP_075320973.1 protein TolQ -
  JFL54_RS01465 (JFL54_01465) tolR 275342..275764 (+) 423 WP_011608414.1 colicin uptake protein TolR -
  JFL54_RS01470 (JFL54_01470) tolA 275783..276838 (+) 1056 WP_075320972.1 cell envelope integrity protein TolA -
  JFL54_RS01475 (JFL54_01475) tolB 276866..278170 (+) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  JFL54_RS01480 (JFL54_01480) pal 278180..278635 (+) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  JFL54_RS01500 (JFL54_01500) comN 279309..279836 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL54_RS01505 (JFL54_01505) - 279885..280562 (+) 678 WP_011608419.1 type II secretion system protein J -
  JFL54_RS01510 (JFL54_01510) - 280565..281245 (+) 681 WP_132995094.1 DUF2572 family protein -
  JFL54_RS01515 (JFL54_01515) - 281226..281543 (+) 318 WP_012340547.1 DUF5374 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20468.96 Da        Isoelectric Point: 9.6079

>NTDB_id=520924 JFL54_RS01500 WP_011608418.1 279309..279836(+) (comN) [Histophilus somni strain ASc-MMNZ-VFA-075]
MKALKGFTLLEILIVLLIISMTVTFSFPMWQTANTKMILEKEQNKLYIFIRELQARVENSNDIWFLIANRDLVSKRWCLV
AQPKNTDICDCLNPRSCNRNIPMKFYYPYFADKTMLISKVYYPREMTRLNGTRNTSTTTCFVLQSDQQRTVFSFFNVGSL
KLKGYQSLSACVNDH

Nucleotide


Download         Length: 528 bp        

>NTDB_id=520924 JFL54_RS01500 WP_011608418.1 279309..279836(+) (comN) [Histophilus somni strain ASc-MMNZ-VFA-075]
ATGAAAGCATTAAAGGGGTTTACTCTATTAGAAATATTGATTGTTTTACTGATTATCAGTATGACAGTAACATTTTCTTT
TCCCATGTGGCAAACAGCAAATACAAAAATGATTTTAGAAAAAGAGCAAAATAAACTCTATATTTTCATAAGGGAGCTAC
AAGCTCGAGTTGAAAATTCTAATGATATTTGGTTTTTAATTGCTAATCGTGATTTAGTGAGTAAGCGTTGGTGTCTGGTT
GCACAACCAAAAAACACAGATATATGTGATTGTTTAAATCCTCGCAGCTGTAATAGAAATATTCCGATGAAATTTTATTA
TCCTTATTTTGCAGATAAAACCATGTTAATCAGCAAAGTTTATTATCCTAGAGAAATGACTAGATTAAATGGTACAAGGA
ATACAAGTACGACGACTTGTTTTGTGTTGCAATCTGATCAGCAAAGAACAGTATTTTCGTTTTTTAATGTAGGATCTTTA
AAACTTAAAGGTTACCAATCGTTAAGTGCTTGCGTGAATGATCATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

53.293

95.429

0.509