Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JEQ22_RS08370 Genome accession   NZ_CP066501
Coordinates   1660543..1661322 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain ID-A02     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655543..1666322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ22_RS08350 (JEQ22_08295) trmFO 1656230..1657537 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JEQ22_RS08355 (JEQ22_08300) xerC 1657607..1658524 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  JEQ22_RS08360 (JEQ22_08305) hslV 1658540..1659085 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  JEQ22_RS08365 (JEQ22_08310) hslU 1659093..1660505 (+) 1413 WP_257986734.1 HslU--HslV peptidase ATPase subunit -
  JEQ22_RS08370 (JEQ22_08315) codY 1660543..1661322 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JEQ22_RS08375 (JEQ22_08320) flgB 1661676..1662065 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  JEQ22_RS08380 (JEQ22_08325) flgC 1662065..1662517 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  JEQ22_RS08385 (JEQ22_08330) fliE 1662528..1662848 (+) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  JEQ22_RS08390 (JEQ22_08335) fliF 1662891..1664501 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  JEQ22_RS08395 (JEQ22_08340) fliG 1664514..1665530 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JEQ22_RS08400 (JEQ22_08345) fliH 1665523..1666278 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=520523 JEQ22_RS08370 WP_003154263.1 1660543..1661322(+) (codY) [Bacillus velezensis strain ID-A02]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=520523 JEQ22_RS08370 WP_003154263.1 1660543..1661322(+) (codY) [Bacillus velezensis strain ID-A02]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471