Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SMUGS5_RS04145 Genome accession   NC_018089
Coordinates   864729..866531 (+) Length   600 a.a.
NCBI ID   WP_002283869.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 845334..868275 864729..866531 within 0


Gene organization within MGE regions


Location: 845334..868275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS04070 (SMUGS5_03995) - 845334..846539 (+) 1206 WP_014834939.1 CCA tRNA nucleotidyltransferase -
  SMUGS5_RS04075 (SMUGS5_04000) - 846542..848410 (+) 1869 WP_014834940.1 ABC-F family ATP-binding cassette domain-containing protein -
  SMUGS5_RS04085 (SMUGS5_04010) - 848866..850602 (+) 1737 WP_002283303.1 ABC transporter ATP-binding protein -
  SMUGS5_RS04090 (SMUGS5_04015) - 850613..852385 (+) 1773 WP_014834941.1 ABC transporter ATP-binding protein -
  SMUGS5_RS04095 (SMUGS5_04020) - 852501..853421 (+) 921 WP_014834942.1 AEC family transporter -
  SMUGS5_RS04100 (SMUGS5_04025) gtfD 853641..858029 (+) 4389 WP_014834943.1 glucosyltransferase-S -
  SMUGS5_RS04105 (SMUGS5_04030) - 858205..858714 (-) 510 WP_002274326.1 DUF308 domain-containing protein -
  SMUGS5_RS04110 (SMUGS5_04035) gdhA 859476..860825 (+) 1350 WP_002263849.1 NADP-specific glutamate dehydrogenase -
  SMUGS5_RS04115 (SMUGS5_04040) - 860935..861318 (-) 384 WP_014834944.1 DUF3021 family protein -
  SMUGS5_RS10425 (SMUGS5_04045) queF 861427..861915 (-) 489 WP_002265143.1 preQ(1) synthase -
  SMUGS5_RS10430 (SMUGS5_04050) queE 861928..862644 (-) 717 WP_014834945.1 7-carboxy-7-deazaguanine synthase QueE -
  SMUGS5_RS04130 (SMUGS5_04055) queD 862641..863087 (-) 447 WP_002265145.1 6-carboxytetrahydropterin synthase QueD -
  SMUGS5_RS04135 (SMUGS5_04060) queC 863062..863739 (-) 678 WP_014834946.1 7-cyano-7-deazaguanine synthase QueC -
  SMUGS5_RS04140 (SMUGS5_04065) rcrR 864291..864725 (+) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SMUGS5_RS04145 (SMUGS5_04070) rcrP 864729..866531 (+) 1803 WP_002283869.1 ABC transporter ATP-binding protein Regulator
  SMUGS5_RS04150 (SMUGS5_04075) rcrQ 866521..868275 (+) 1755 WP_014834947.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66939.76 Da        Isoelectric Point: 9.7258

>NTDB_id=52028 SMUGS5_RS04145 WP_002283869.1 864729..866531(+) (rcrP) [Streptococcus mutans GS-5]
MFKIFKRLNAKEWGMVLLSTAFICLAVWMDLKTPEYMSNITTLLQTKGTTASDIMDPGSKMLMFSFGSFFMAVLVGFLAS
RTAASFTTRLRSDIFNRVMDYSEAEIKKFSIPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAVWALTKIWGKSDEWTGA
VGVAVLIVFIMLSVLMFVAFPRQRQVQSLTDALNSTTRESLTGVRVVRAYNAEDYQDTKFKRENKNLTKLNLLVYRLMSL
MNPVMTVVSSGLTLAIYWIGAYLLNDIKIPMTSVTAAKGAIADRISVFSDMVVFSSYAMQVVVGFMMMVAIFIILPRALV
SAKRINEVLALNSSVHFKEYSKADNARKGEVEFHDVSFRYSKNSRAVIEHVSFSAKAGETVAFIGSTGSGKSTLVNLIPR
FYDATEGWIKIDGIKVQNYSHDDLNNKVGYIPQKAVLFSGTIRSNIAFGQSDQAPLDDAKIWEALELAQAKNFVEEKEKG
LDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRNDLAKKTKEMTKLIVAQRISTIMDADHIL
VLDQGKVVGQGTHKELLANNDIYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=52028 SMUGS5_RS04145 WP_002283869.1 864729..866531(+) (rcrP) [Streptococcus mutans GS-5]
ATGTTTAAAATTTTTAAACGTCTAAATGCTAAAGAATGGGGCATGGTTCTCCTTAGTACTGCCTTTATCTGTTTGGCTGT
CTGGATGGATTTGAAGACGCCCGAATATATGTCCAACATTACAACCTTGCTGCAGACTAAGGGAACGACCGCCTCAGATA
TTATGGATCCGGGATCTAAGATGCTCATGTTTTCATTTGGGAGCTTTTTTATGGCCGTTCTAGTTGGTTTTTTAGCTTCA
AGAACAGCTGCTAGCTTTACGACCCGTCTTCGATCTGATATTTTCAATCGGGTTATGGATTATTCAGAGGCGGAAATCAA
GAAATTTTCCATTCCCAGCCTTCTAACGCGTACGACTAATGATTTGACACAGTTGCAAATCATGATCGTTATGGGAATGC
AAGTGGTGACACGCGGTCCAATCATGGCTGTTTGGGCCTTGACTAAAATCTGGGGTAAAAGCGATGAATGGACAGGAGCA
GTCGGTGTTGCCGTTTTAATTGTCTTTATTATGCTGTCTGTTTTGATGTTTGTCGCTTTTCCAAGACAGCGTCAGGTGCA
GAGCTTGACGGATGCTCTAAATTCTACAACCCGTGAATCTCTGACTGGTGTTCGTGTTGTTCGGGCTTACAATGCAGAAG
ATTATCAGGACACTAAATTTAAGCGGGAAAATAAAAACCTGACGAAATTGAATTTATTGGTCTATCGTCTGATGTCGCTA
ATGAATCCTGTCATGACAGTTGTTTCCAGTGGTCTAACTTTAGCTATTTATTGGATTGGAGCTTACCTGCTCAATGATAT
TAAAATTCCTATGACCAGTGTGACAGCTGCTAAAGGAGCTATTGCTGATCGTATCAGTGTTTTTAGTGATATGGTTGTCT
TTTCATCTTATGCCATGCAGGTTGTTGTCGGTTTTATGATGATGGTCGCTATCTTTATCATTTTACCGCGTGCTTTAGTT
TCTGCCAAACGAATTAATGAAGTATTGGCGCTTAACTCATCTGTACACTTCAAAGAATATTCTAAAGCAGACAATGCTCG
AAAAGGAGAAGTCGAATTTCATGATGTATCGTTTCGTTACAGTAAAAATTCTCGTGCGGTTATTGAGCATGTGTCTTTCA
GTGCTAAAGCTGGTGAGACAGTTGCTTTTATTGGTTCCACTGGCTCAGGAAAATCAACTCTTGTTAATCTGATTCCTCGT
TTTTATGATGCTACAGAAGGTTGGATTAAGATAGATGGCATCAAAGTGCAAAATTACAGCCATGATGACCTCAACAATAA
AGTCGGCTATATTCCGCAAAAGGCAGTGCTTTTTAGTGGGACCATTCGTTCTAATATTGCATTTGGGCAAAGCGATCAAG
CGCCGCTTGATGATGCTAAAATTTGGGAGGCTCTTGAACTAGCCCAAGCCAAAAACTTTGTTGAAGAAAAAGAAAAGGGT
CTGGATACCGAGGTAGCTCAAGGCGGTACCAACTTCTCTGGCGGTCAAAAGCAGCGCTTAGCTATTGCCCGTGCACTTGC
ACGCAAACCAGAAATTCTTATTTTTGATGACTCCTTCTCAGCTCTTGATTATAAGACGGATCGCATTCTGCGAAATGATT
TGGCAAAGAAAACCAAAGAAATGACTAAGTTGATTGTCGCCCAACGTATTTCAACTATTATGGATGCTGATCATATTTTA
GTCTTAGATCAAGGAAAGGTTGTTGGTCAAGGAACACACAAGGAATTACTGGCTAATAACGATATTTATCAAGAAATTGC
TTATTCACAACTATCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(369-518)

ABC transporter transmembrane region (ABC_membrane)

(17-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

99.667

100

0.997

Multiple sequence alignment