Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   K0V03_RS17255 Genome accession   NZ_CP080508
Coordinates   3249914..3250831 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain HD15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3244914..3255831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS17240 (K0V03_17240) trpS 3245494..3246486 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  K0V03_RS17245 (K0V03_17245) oppA 3247230..3248867 (+) 1638 WP_106610842.1 oligopeptide ABC transporter substrate-binding protein OppA -
  K0V03_RS17250 (K0V03_17250) oppB 3248975..3249910 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  K0V03_RS17255 (K0V03_17255) amiD 3249914..3250831 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  K0V03_RS17260 (K0V03_17260) oppD 3250836..3251912 (+) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  K0V03_RS17265 (K0V03_17265) oppF 3251914..3252831 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  K0V03_RS17270 (K0V03_17270) yjbB 3252938..3254155 (+) 1218 WP_085186279.1 MFS transporter -
  K0V03_RS17275 (K0V03_17275) yjbC 3254319..3254897 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  K0V03_RS17280 (K0V03_17280) spx 3255078..3255473 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=520070 K0V03_RS17255 WP_003232954.1 3249914..3250831(+) (amiD) [Bacillus subtilis strain HD15]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=520070 K0V03_RS17255 WP_003232954.1 3249914..3250831(+) (amiD) [Bacillus subtilis strain HD15]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364