Detailed information NTG0519741

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: K1T74_RS09090
• Genome accession: NZ_CP080462
• Coordinates: 1960317..1961666 (-)
• Length: 449 a.a.
• NCBI ID: WP_000073976.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain ICDC-VC702
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1955317..1966666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K1T74_RS09075	bioB	1956334..1957386 (-)	1053	WP_000453785.1	biotin synthase BioB	-
K1T74_RS09080	bioA	1957519..1958799 (+)	1281	WP_162923848.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
K1T74_RS09085	serS	1958906..1960213 (-)	1308	WP_000887349.1	serine--tRNA ligase	-
K1T74_RS09090	rarA	1960317..1961666 (-)	1350	WP_000073976.1	replication-associated recombination protein A	Machinery gene
K1T74_RS09095	lolA	1961691..1962287 (-)	597	WP_029628328.1	outer membrane lipoprotein chaperone LolA	-
K1T74_RS09100	-	1962383..1963003 (-)	621	WP_220105679.1	YecA family protein	-
K1T74_RS09105	dusC	1963169..1964140 (+)	972	WP_220105680.1	tRNA dihydrouridine(16) synthase DusC	-
K1T74_RS09110	-	1964173..1965642 (-)	1470	WP_001887386.1	sensor domain-containing diguanylate cyclase	-
K1T74_RS09115	-	1965810..1966604 (-)	795	WP_000620368.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49814.32 Da
• Isoelectric Point: 6.0310

>NTDB_id=519741 K1T74_RS09090 WP_000073976.1 1960317..1961666(-) (rarA) [Vibrio cholerae strain ICDC-VC702]
MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVALAAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAY
AAGECYFPPEMSGTRYYQPTQRGLETKIAEKLAYLADLNAKSPQKRYEK

Nucleotide

• Length: 1350 bp

>NTDB_id=519741 K1T74_RS09090 WP_000073976.1 1960317..1961666(-) (rarA) [Vibrio cholerae strain ICDC-VC702]
GTGAGTAATTACAGCTTAGATTTTTCCGGCGACGAAGATTTTCGTCCGTTAGCTGCCCGTATGCGTCCACAAACCGTGGA
GCAGTATATTGGTCAGCAACACATCTTAGGGCCGGGAAAACCGCTGCGCCGTGCATTAGAAGCGGGGCATATTCACTCGA
TGATTCTTTGGGGACCTCCGGGCACCGGAAAAACCACTTTAGCTGAAGTGGCAGCCAACTACGCCAATGCGGAAGTGGAA
CGCGTATCGGCAGTGACGTCCGGAGTCAAAGAGATCCGTGCCGCGATCGAAAAAGCGCGTGAGAACAAACTCAGTGGTCG
TCGCACTATTTTGTTTGTCGACGAAGTCCATCGCTTTAATAAATCGCAGCAAGATGCGTTTTTGCCGCATATTGAAGACG
GCACGGTCACTTTTATTGGTGCAACCACGGAAAACCCTTCTTTTGAGCTTAATAACGCGCTGCTTTCCCGCGCGCGGGTT
TATAAGCTCACCTCACTCAATCAACAAGAAATTCTGCAAGCTCTGCATCAAGCGATTGCCGATACTGAACGCGGGCTTGG
CAAAGTGGCGGCGGTATTTGCTGATAATGTTTTAGATCGCCTAGCCGAACTGGTCAATGGCGATGCGCGCATGTCGCTCA
ATTATCTTGAACTGCTGTACGACATGGCTCGCGAAGATGATCAGGGACGCAAGCAGATTGATCTGCCTTTATTGGCTGAA
GTCGCTGGTGAAAAAGTGTCGCGCTTTGATAACAAGGGCGATATTTGGTATGACCTGATTTCTGCTGTACACAAATCGAT
TCGAGGTTCCGATCCCGATGCAGCGCTGTACTGGGCGGCGCGGATGATTTCCGCAGGCTGTGACCCTTTGTATATCGCGC
GCCGTCTGCTCGCGATTGCCTCTGAAGATGTTGGTAATGCCGACCCACGGGGCATGCAAGTGGCACTCGCAGCGTGGGAT
TGCTTTACCCGTGTGGGGCCTGCAGAAGGCGAGCGCGCGATTGCTCAAGCGATTGTCTACCTCGCCTGCGCACCGAAAAG
CAATGCGGTGTACACCGCGTGGAAACAAGCGCTGTCGGATGCGCATAATCTGCCTGAGTTTGAAGTACCGCCGCATCTGC
GTAATGCCCCAACGCGATTGATGAAAGATCTCGGTTATGGTGAGGAATACCGTTACGCCCATGATGAACCGGGCGCTTAT
GCTGCAGGGGAGTGCTATTTCCCACCAGAAATGAGTGGAACTCGCTACTATCAGCCTACTCAACGCGGGCTAGAAACTAA
GATTGCTGAAAAGTTAGCGTATCTGGCGGATTTGAACGCAAAAAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (192-268)

• ATPase family associated with various cellular activities (AAA) (AAA) (54-159)

• MgsA AAA+ ATPase C terminal (MgsA_C) (269-435)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.512	91.314	0.361