Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JEQ24_RS08885 Genome accession   NZ_CP066379
Coordinates   1723773..1724552 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain ID-A04     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1718773..1729552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ24_RS08865 (JEQ24_08775) trmFO 1719460..1720767 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JEQ24_RS08870 (JEQ24_08780) xerC 1720837..1721754 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  JEQ24_RS08875 (JEQ24_08785) hslV 1721770..1722315 (+) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  JEQ24_RS08880 (JEQ24_08790) hslU 1722323..1723735 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  JEQ24_RS08885 (JEQ24_08795) codY 1723773..1724552 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JEQ24_RS08890 (JEQ24_08800) flgB 1724906..1725295 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  JEQ24_RS08895 (JEQ24_08805) flgC 1725295..1725747 (+) 453 WP_022553347.1 flagellar basal body rod protein FlgC -
  JEQ24_RS08900 (JEQ24_08810) fliE 1725758..1726078 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  JEQ24_RS08905 (JEQ24_08815) fliF 1726121..1727731 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  JEQ24_RS08910 (JEQ24_08820) fliG 1727744..1728760 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JEQ24_RS08915 (JEQ24_08825) fliH 1728753..1729508 (+) 756 WP_022553345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=519738 JEQ24_RS08885 WP_003154263.1 1723773..1724552(+) (codY) [Bacillus velezensis strain ID-A04]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=519738 JEQ24_RS08885 WP_003154263.1 1723773..1724552(+) (codY) [Bacillus velezensis strain ID-A04]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471