Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JEQ23_RS09175 Genome accession   NZ_CP066378
Coordinates   1765377..1766156 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain ID-A03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760377..1771156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ23_RS09155 (JEQ23_09070) trmFO 1761064..1762371 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JEQ23_RS09160 (JEQ23_09075) xerC 1762441..1763358 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  JEQ23_RS09165 (JEQ23_09080) hslV 1763374..1763919 (+) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  JEQ23_RS09170 (JEQ23_09085) hslU 1763927..1765339 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  JEQ23_RS09175 (JEQ23_09090) codY 1765377..1766156 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JEQ23_RS09180 (JEQ23_09095) flgB 1766510..1766899 (+) 390 Protein_1752 flagellar basal body rod protein FlgB -
  JEQ23_RS09185 (JEQ23_09100) flgC 1766899..1767351 (+) 453 WP_022553347.1 flagellar basal body rod protein FlgC -
  JEQ23_RS09190 (JEQ23_09105) fliE 1767362..1767682 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  JEQ23_RS09195 (JEQ23_09110) fliF 1767725..1769335 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  JEQ23_RS09200 (JEQ23_09115) fliG 1769348..1770364 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JEQ23_RS09205 (JEQ23_09120) fliH 1770357..1771112 (+) 756 WP_022553345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=519662 JEQ23_RS09175 WP_003154263.1 1765377..1766156(+) (codY) [Bacillus velezensis strain ID-A03]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=519662 JEQ23_RS09175 WP_003154263.1 1765377..1766156(+) (codY) [Bacillus velezensis strain ID-A03]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471