Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JD108_RS15160 Genome accession   NZ_CP066308
Coordinates   2973333..2975591 (-) Length   752 a.a.
NCBI ID   WP_198826863.1    Uniprot ID   A0A7T5EIG8
Organism   Brevibacillus composti strain FJAT-54423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2968333..2980591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD108_RS15135 (JD108_15135) - 2969999..2971063 (-) 1065 WP_228728164.1 AI-2E family transporter -
  JD108_RS15140 (JD108_15140) - 2971479..2972165 (+) 687 WP_198826859.1 TerC family protein -
  JD108_RS15145 (JD108_15145) - 2972319..2972504 (-) 186 WP_198826860.1 hypothetical protein -
  JD108_RS15150 (JD108_15150) - 2972529..2972735 (-) 207 WP_198826861.1 hypothetical protein -
  JD108_RS15155 (JD108_15155) - 2972773..2973255 (-) 483 WP_198826862.1 PRC-barrel domain-containing protein -
  JD108_RS15160 (JD108_15160) recD2 2973333..2975591 (-) 2259 WP_198826863.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JD108_RS15165 (JD108_15165) - 2975701..2976126 (-) 426 WP_198826864.1 methyl-accepting chemotaxis protein -
  JD108_RS15170 (JD108_15170) - 2976378..2977520 (-) 1143 WP_198826865.1 cysteine desulfurase family protein -
  JD108_RS15175 (JD108_15175) cymR 2977533..2977952 (-) 420 WP_198826866.1 cysteine metabolism transcriptional regulator CymR -
  JD108_RS15180 (JD108_15180) - 2978065..2978238 (+) 174 WP_198826867.1 hypothetical protein -
  JD108_RS15185 (JD108_15185) - 2978336..2979670 (-) 1335 WP_198826868.1 AAA family ATPase -
  JD108_RS15190 (JD108_15190) - 2979677..2980432 (-) 756 WP_198830146.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 85020.32 Da        Isoelectric Point: 5.6005

>NTDB_id=519221 JD108_RS15160 WP_198826863.1 2973333..2975591(-) (recD2) [Brevibacillus composti strain FJAT-54423]
MSQQTLPLFAESFVRGNIVQEIFYNEETWYGVIRLKVEETAEPIKESEIVVVGNFPRPHPEELYTFYGEWKTHPRFGQQF
AASRYERETPKTAAGVEKYLASGLFQGIGKKMAKRIVEHLGVNALSIIADRPEALAEIPGISETRAKQIYGSVMEHRSLE
QAMVFLYEFGIGVQLALRIYQTYKLETMKVLTEEPYRLIEDVQGIGFKRADEIARSTGIAASSEQRIQAAVIFTLQEASY
AEGHVFLPMEELVEKTMRLLHECGGHLFQPEEISQAIEALFVSSKLVWDEDRVYLPSLFFAEVGLAKRLRFFADREDFGS
FPVSELYHALGAVEEELAITYAQTQRDAIEQAIKSGLMLLTGGPGTGKTTVIRGICRVFAYLHGISFDLKKYDEKNPFPI
LLAAPTGRAAKRMAETTGLPAMTIHRLLGWKGESFEHDAEHQIQGKLLIVDEMSMVDVWLANQLFRALPSDMQVILVGDP
DQLPSVGPGNVLQDMIRSGLLPRIQLTEIYRQAQESSIIRLAHDVRKGIVPDDLLQTSPDRRFFTSSPQDVNEAVKQICL
GAVRKGYTAKDVQVLAPMYKGNAGVNRLNEELQELFNPKTGQKREVAFGDTRFRTGDKVLQLVNNAEEQVFNGDMGEIVA
IFYPNENAENEEMIVVSFDGREVTYKRSDYHQLTLAYCCSVHKSQGSEFPIVVMPFVRNYHRMLRRKLVYTGITRSKAFL
IMCGEPEAFRLAVQSDEEGVRYSYLEERLKQG

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=519221 JD108_RS15160 WP_198826863.1 2973333..2975591(-) (recD2) [Brevibacillus composti strain FJAT-54423]
ATGTCGCAGCAAACACTCCCTTTGTTTGCCGAATCATTTGTTCGCGGCAATATCGTTCAAGAAATTTTTTACAATGAAGA
AACATGGTACGGAGTTATACGTCTTAAAGTAGAGGAGACAGCGGAACCGATCAAGGAGTCAGAGATCGTCGTGGTCGGGA
ACTTTCCCCGGCCGCATCCGGAAGAACTCTATACATTCTATGGAGAATGGAAAACACACCCTCGTTTTGGACAGCAGTTC
GCCGCCTCCCGGTATGAGCGCGAAACCCCCAAAACGGCGGCTGGCGTAGAAAAATATCTGGCCAGTGGTCTCTTCCAGGG
AATTGGAAAAAAGATGGCGAAACGGATCGTGGAGCATTTGGGCGTCAATGCGCTGTCCATCATCGCAGACCGTCCCGAAG
CGCTGGCGGAGATTCCGGGCATCTCGGAAACACGCGCCAAGCAGATTTATGGTTCGGTGATGGAACATCGTTCCTTGGAA
CAGGCCATGGTGTTTTTGTACGAGTTCGGCATCGGCGTCCAGCTGGCATTGCGCATCTACCAGACCTACAAGCTGGAGAC
GATGAAGGTCCTGACGGAAGAACCTTACCGCCTGATCGAGGATGTGCAGGGTATCGGCTTCAAGCGTGCGGATGAAATCG
CCCGTTCCACGGGAATTGCCGCCTCCTCCGAGCAGCGGATTCAGGCCGCAGTGATCTTCACGCTGCAGGAGGCTTCCTAC
GCGGAGGGACATGTCTTCCTGCCCATGGAGGAATTGGTGGAAAAGACGATGCGCCTCCTGCATGAATGCGGCGGCCATCT
GTTTCAGCCAGAGGAGATCAGCCAGGCCATCGAGGCGCTGTTTGTGTCATCCAAGCTGGTGTGGGACGAAGACAGGGTAT
ACCTGCCCAGCCTGTTCTTTGCGGAAGTGGGCCTCGCCAAACGGCTTCGCTTTTTCGCGGATCGCGAGGATTTCGGTTCG
TTTCCCGTCTCCGAGCTGTATCATGCGCTCGGCGCGGTAGAAGAGGAACTGGCGATCACCTATGCCCAGACGCAGCGGGA
CGCGATCGAACAGGCGATCAAGTCGGGTCTCATGCTGCTGACGGGCGGACCCGGAACAGGGAAGACGACAGTGATCCGCG
GGATCTGTCGCGTTTTTGCCTATCTGCACGGCATCTCCTTCGATCTCAAAAAGTACGATGAAAAAAATCCGTTTCCGATC
CTGCTGGCTGCGCCTACCGGCCGGGCAGCCAAACGGATGGCTGAAACAACCGGTCTCCCTGCCATGACGATTCACCGCTT
GCTTGGCTGGAAGGGAGAGAGCTTCGAGCATGATGCCGAACATCAGATTCAGGGCAAGCTGCTGATCGTCGACGAGATGT
CGATGGTCGACGTCTGGCTGGCCAATCAGCTGTTCAGAGCGCTGCCCAGCGACATGCAAGTCATCCTCGTCGGCGACCCG
GACCAGCTGCCCTCCGTGGGGCCGGGCAATGTGCTCCAGGATATGATCCGCTCCGGCCTGTTGCCGCGCATACAGTTGAC
CGAGATCTACCGTCAGGCGCAGGAGTCCTCGATCATCCGTCTGGCGCATGATGTGCGCAAGGGAATCGTCCCGGACGATT
TGCTTCAGACCTCCCCAGATCGAAGATTTTTCACAAGTTCGCCACAAGATGTAAATGAAGCGGTGAAACAAATTTGCTTG
GGCGCCGTAAGAAAAGGATATACAGCAAAAGATGTTCAGGTGCTCGCCCCGATGTACAAGGGAAATGCCGGGGTGAATCG
GCTGAACGAGGAGCTTCAAGAGCTGTTTAACCCCAAGACGGGGCAGAAGCGGGAAGTGGCGTTTGGCGATACCCGTTTCC
GCACCGGGGACAAAGTGCTTCAGCTGGTAAACAATGCCGAAGAACAGGTGTTCAACGGCGATATGGGTGAGATTGTTGCG
ATCTTTTACCCGAATGAAAACGCAGAGAATGAAGAGATGATCGTGGTTTCCTTTGACGGTCGCGAAGTCACCTACAAGCG
ATCCGACTACCATCAGTTGACGCTCGCCTATTGCTGCTCGGTACATAAGTCGCAAGGCAGCGAGTTTCCCATCGTCGTCA
TGCCGTTTGTAAGAAATTACCATCGCATGCTGCGGCGAAAGCTGGTGTATACGGGAATCACGCGAAGCAAAGCATTTTTA
ATCATGTGTGGAGAGCCGGAAGCATTTCGCCTCGCCGTTCAAAGCGATGAGGAAGGCGTGCGATACAGCTACCTGGAGGA
ACGTCTGAAACAAGGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-531)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-722)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)

Helix-hairpin-helix domain (HHH_5)

(106-150)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-658)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5EIG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.93

99.468

0.487