Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SA40_RS06020 Genome accession   NC_022443
Coordinates   1233033..1233806 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus subsp. aureus SA40     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228033..1238806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA40_RS06000 (SA40_1124) trmFO 1228376..1229683 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SA40_RS06005 (SA40_1125) xerC 1230101..1230997 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  SA40_RS06010 (SA40_1126) hslV 1230994..1231539 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SA40_RS06015 (SA40_1127) hslU 1231605..1233008 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SA40_RS06020 (SA40_1128) codY 1233033..1233806 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SA40_RS06025 - 1233857..1233949 (+) 93 WP_031788481.1 hypothetical protein -
  SA40_RS06030 (SA40_1129) rpsB 1234148..1234915 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SA40_RS06035 - 1234949..1235062 (+) 114 WP_031845108.1 hypothetical protein -
  SA40_RS06040 (SA40_1130) tsf 1235097..1235978 (+) 882 WP_000201386.1 translation elongation factor Ts -
  SA40_RS06045 (SA40_1131) pyrH 1236115..1236837 (+) 723 WP_000057330.1 UMP kinase -
  SA40_RS06050 (SA40_1132) frr 1236856..1237410 (+) 555 WP_001280006.1 ribosome recycling factor -
  SA40_RS06055 (SA40_1133) - 1237783..1238553 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=51915 SA40_RS06020 WP_000055337.1 1233033..1233806(+) (codY) [Staphylococcus aureus subsp. aureus SA40]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=51915 SA40_RS06020 WP_000055337.1 1233033..1233806(+) (codY) [Staphylococcus aureus subsp. aureus SA40]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment