Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KZ799_RS09205 Genome accession   NZ_CP080281
Coordinates   2021980..2022705 (-) Length   241 a.a.
NCBI ID   WP_003117927.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2016980..2027705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ799_RS09180 (KZ799_09180) - 2017452..2017967 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  KZ799_RS09185 (KZ799_09185) rarD 2018657..2019553 (-) 897 WP_003103301.1 EamA family transporter RarD -
  KZ799_RS09190 (KZ799_09190) - 2019756..2020730 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  KZ799_RS09195 (KZ799_09195) - 2020792..2021550 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  KZ799_RS09200 (KZ799_09200) - 2021618..2021938 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  KZ799_RS09205 (KZ799_09205) comF 2021980..2022705 (-) 726 WP_003117927.1 ComF family protein Machinery gene
  KZ799_RS09210 (KZ799_09210) - 2022844..2023137 (-) 294 WP_023086814.1 hypothetical protein -
  KZ799_RS09215 (KZ799_09215) - 2023191..2024117 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  KZ799_RS09220 (KZ799_09220) - 2024235..2024993 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  KZ799_RS09225 (KZ799_09225) - 2025070..2025318 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  KZ799_RS09230 (KZ799_09230) - 2025329..2026705 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  KZ799_RS09235 (KZ799_09235) - 2026707..2027585 (+) 879 WP_003117928.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27062.56 Da        Isoelectric Point: 11.2212

>NTDB_id=519073 KZ799_RS09205 WP_003117927.1 2021980..2022705(-) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF17]
MSFPLRPLTRWLLPPPACLLCAARSDQPARPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=519073 KZ799_RS09205 WP_003117927.1 2021980..2022705(-) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF17]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGGCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTACCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCTGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.017

100

0.382