Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   KZ794_RS01735 Genome accession   NZ_CP080280
Coordinates   376486..377010 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain UNC_PaerCF20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371486..382010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ794_RS01715 (KZ794_01715) - 371553..374024 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  KZ794_RS01720 (KZ794_01720) pilM 374209..375273 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  KZ794_RS01725 (KZ794_01725) pilN 375273..375869 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  KZ794_RS01730 (KZ794_01730) pilO 375866..376489 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  KZ794_RS01735 (KZ794_01735) comL/pilP 376486..377010 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  KZ794_RS01740 (KZ794_01740) pilQ 377064..379208 (+) 2145 WP_023083249.1 type 4a pilus secretin PilQ Machinery gene
  KZ794_RS01745 (KZ794_01745) aroK 379220..379738 (+) 519 WP_003095833.1 shikimate kinase AroK -
  KZ794_RS01750 (KZ794_01750) aroB 379788..380894 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=518930 KZ794_RS01735 WP_003095836.1 376486..377010(+) (comL/pilP) [Pseudomonas aeruginosa strain UNC_PaerCF20]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=518930 KZ794_RS01735 WP_003095836.1 376486..377010(+) (comL/pilP) [Pseudomonas aeruginosa strain UNC_PaerCF20]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGGGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362