Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H9K57_RS00680 Genome accession   NZ_CP066246
Coordinates   148901..149626 (-) Length   241 a.a.
NCBI ID   WP_248377633.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DHO76     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143901..154626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K57_RS00655 (H9K57_00660) - 145020..145511 (+) 492 WP_248377973.1 type II secretion system protein M -
  H9K57_RS00660 (H9K57_00665) - 145513..146274 (+) 762 WP_248377631.1 type II secretion system protein N -
  H9K57_RS00665 (H9K57_00670) cysQ 146561..147388 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  H9K57_RS00670 (H9K57_00675) nudE 147429..147998 (-) 570 WP_193283590.1 ADP compounds hydrolase NudE -
  H9K57_RS00675 (H9K57_00680) nfuA 148219..148803 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  H9K57_RS00680 (H9K57_00685) comF 148901..149626 (-) 726 WP_248377633.1 phosphoribosyltransferase family protein Machinery gene
  H9K57_RS00685 (H9K57_00690) bioH 149711..150478 (+) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  H9K57_RS00690 (H9K57_00695) - 150602..151066 (+) 465 WP_069490159.1 ATP-dependent Lon protease -
  H9K57_RS00695 (H9K57_00700) - 151202..153523 (-) 2322 WP_025508777.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27702.87 Da        Isoelectric Point: 8.9991

>NTDB_id=518868 H9K57_RS00680 WP_248377633.1 148901..149626(-) (comF) [Vibrio parahaemolyticus strain DHO76]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRPPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=518868 H9K57_RS00680 WP_248377633.1 148901..149626(-) (comF) [Vibrio parahaemolyticus strain DHO76]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGACCCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

47.899

98.755

0.473