Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   IOO20_RS07470 Genome accession   NZ_CP066241
Coordinates   1426462..1426977 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain RM1221     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1421462..1431977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO20_RS07455 - 1421584..1423305 (-) 1722 WP_198731970.1 flagellin A -
  IOO20_RS07460 - 1423402..1425210 (-) 1809 WP_198731971.1 motility associated factor glycosyltransferase family protein -
  IOO20_RS07465 - 1425220..1426462 (-) 1243 Protein_1477 DUF2920 family protein -
  IOO20_RS07470 ctsG 1426462..1426977 (-) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  IOO20_RS07475 tsaD 1426978..1427985 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  IOO20_RS07480 - 1427982..1429376 (-) 1395 WP_011049962.1 M99 family carboxypeptidase catalytic domain-containing protein -
  IOO20_RS07485 dxr 1429378..1430448 (-) 1071 WP_002867315.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  IOO20_RS07490 cdsA 1430445..1431170 (-) 726 WP_002867314.1 phosphatidate cytidylyltransferase -
  IOO20_RS07495 - 1431179..1431517 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=518827 IOO20_RS07470 WP_002799196.1 1426462..1426977(-) (ctsG) [Campylobacter jejuni strain RM1221]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=518827 IOO20_RS07470 WP_002799196.1 1426462..1426977(-) (ctsG) [Campylobacter jejuni strain RM1221]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942