Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   JD965_RS13150 Genome accession   NZ_CP066219
Coordinates   2588350..2590710 (-) Length   786 a.a.
NCBI ID   WP_198697940.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2583350..2595710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS13130 (JD965_13130) - 2583426..2584988 (+) 1563 WP_198697939.1 SH3 domain-containing protein -
  JD965_RS13135 (JD965_13135) dtd 2585014..2585457 (-) 444 WP_016938814.1 D-aminoacyl-tRNA deacylase -
  JD965_RS13140 (JD965_13140) relA 2585470..2587674 (-) 2205 WP_064777705.1 GTP diphosphokinase -
  JD965_RS13145 (JD965_13145) - 2587832..2588344 (-) 513 WP_003152714.1 adenine phosphoribosyltransferase -
  JD965_RS13150 (JD965_13150) recJ 2588350..2590710 (-) 2361 WP_198697940.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  JD965_RS13155 (JD965_13155) - 2590766..2591092 (-) 327 WP_016938811.1 LapA family protein -
  JD965_RS13160 (JD965_13160) - 2591156..2591653 (-) 498 WP_198697941.1 cation:proton antiporter regulatory subunit -
  JD965_RS13165 (JD965_13165) secDF 2591784..2594003 (-) 2220 WP_198697942.1 protein translocase subunit SecDF -
  JD965_RS13170 (JD965_13170) - 2594040..2594336 (-) 297 WP_045926489.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 87610.11 Da        Isoelectric Point: 4.8969

>NTDB_id=518521 JD965_RS13150 WP_198697940.1 2588350..2590710(-) (recJ) [Bacillus siamensis strain B28]
MLASKMRWEIQQPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARHFLHTKDADFYDPYELKGMREAVDRIKLAVSQG
EPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIEKLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGRIEQADPAVHLLMTEDQFEAEELASDIDRLNKE
RQKMVKTMTEEAVEMVQQQDGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVPDLRDRLNQLAEETLTEEDFIPIQEVDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDAAVLDCVGFNKGELEAGIVPGSAISIVGEMSINEWNNRKKPQLMIKDA
AVLEWQLFDIRGKRTWEDTVAALPKEKRVLISFNEKTVRKLRGEELPDELVQITSESEAEALSLDGKYAVFLDVPPSEER
LKRLLDGKKPERIYFVFINHEEHFLSSFPSRSDFKWFYAFLLKRGNFDLSKHGLELARHKGWSIDTINFMTKVFFDLGFV
KIEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=518521 JD965_RS13150 WP_198697940.1 2588350..2590710(-) (recJ) [Bacillus siamensis strain B28]
ATGTTAGCATCAAAAATGCGCTGGGAAATCCAGCAGCCGGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGCGCAAGGCATTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGAATTAAAAGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCTCAAGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACATCAGTGATGCTGACGGCACTCAGACAGCT
GTCAGCAAACGTTGACTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGTTTTTCGCTTATCATTACAGTGGATACGGGAATCGCCGCCGTTCATGAAGCTGAAGTCGCAAAAGAGCTG
GGCCTAGACGTCATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCCGACGTATTTGCGATCATCCACCCGAAGCA
GCCGGGCTGCAGCTATCCGTTTAAAGAATTGGCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTT
TGCCGGAAGCTATGCTGGACTTAGCGGCAATCGGTACGGTTGCGGATCTGGTGCCGCTGCATGATGAAAACAGATTAATT
GCGTCACTTGGGATCGAAAAGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGGGATAT
CGGACAAGCTGATGAGGAAACGATCGGGTTTCAGGTTGCACCGAGGCTGAATGCCGTCGGAAGAATAGAACAGGCTGATC
CCGCCGTGCACCTGCTGATGACCGAAGACCAGTTTGAAGCGGAGGAATTGGCTTCCGATATTGACCGGCTGAATAAGGAA
CGCCAGAAAATGGTAAAAACCATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGACGGAAACCCGTCTGCCATTGT
AGTGGCAAAAGCCGGCTGGAACCCGGGGGTTGTCGGGATTGTCGCATCGAAGCTCGCTGAACGTTTTTATCGCCCCGCTG
TCGTGCTGGGGATAGATGAGGAGCAGGGAATCGCTAAAGGATCGGCGCGAAGCATCAGGGGTTTCAACCTTTTTACGAGC
CTTTCACAGTGCAGAGACATTCTCCCTCATTTCGGCGGGCATCCGATGGCCGCAGGAATGACGTTAAAGGCTGAAGATGT
GCCGGATTTAAGGGACAGACTGAATCAATTGGCTGAAGAAACCCTTACGGAAGAGGATTTTATCCCGATTCAGGAGGTTG
ATCTTGTCTGCGGCGTCGAAGACATAACCGTTGAAAGCATTACAGAATTGAATATGCTCTCGCCGTTCGGCATGCTTAAC
CCTAAACCGCATGTCATGGTGGAAAACGCCGTGCTTGATGAAGTGCGCCTGATCGGAGCGAATAAAAATCACGTGAAAAT
GACGGTGAAAAATGATGCCGCCGTTCTCGACTGCGTCGGCTTTAACAAAGGAGAGCTGGAAGCCGGAATTGTCCCCGGAT
CAGCGATTTCCATTGTCGGCGAAATGTCCATTAATGAATGGAACAACAGAAAGAAACCCCAGCTGATGATTAAAGACGCT
GCGGTGCTGGAATGGCAGCTTTTTGATATCAGAGGCAAGCGGACGTGGGAAGATACGGTTGCTGCGCTGCCGAAGGAAAA
GCGGGTGCTCATCAGTTTTAACGAAAAAACTGTCCGAAAACTTCGTGGCGAAGAGCTGCCGGACGAGCTGGTTCAGATCA
CGTCGGAATCCGAGGCGGAGGCTCTTTCGCTTGACGGAAAGTATGCCGTCTTTCTGGATGTGCCGCCGTCAGAGGAGCGG
CTCAAGCGTTTGCTTGACGGGAAGAAGCCGGAACGGATTTATTTTGTTTTTATCAACCATGAAGAACATTTTCTGTCCTC
ATTTCCATCGCGGAGTGATTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCAATTTTGACTTAAGTAAGCATGGTT
TGGAACTTGCGAGACACAAAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTCGCAGATTCGCAAACCTACCAGGTAAA
ACAGCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCGGCCCATGAGCTGAAGGAATGGCTGAATAAGCTGATGA
ACCAAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

81.934

100

0.819