Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JD965_RS08670 Genome accession   NZ_CP066219
Coordinates   1648166..1648945 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1643166..1653945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS08650 (JD965_08650) trmFO 1643853..1645160 (+) 1308 WP_047475020.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JD965_RS08655 (JD965_08655) xerC 1645230..1646147 (+) 918 WP_047475018.1 tyrosine recombinase XerC -
  JD965_RS08660 (JD965_08660) hslV 1646163..1646708 (+) 546 WP_016936128.1 ATP-dependent protease subunit HslV -
  JD965_RS08665 (JD965_08665) hslU 1646725..1648128 (+) 1404 WP_016936127.1 HslU--HslV peptidase ATPase subunit -
  JD965_RS08670 (JD965_08670) codY 1648166..1648945 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JD965_RS08675 (JD965_08675) flgB 1649300..1649689 (+) 390 WP_016936126.1 flagellar basal body rod protein FlgB -
  JD965_RS08680 (JD965_08680) flgC 1649689..1650141 (+) 453 WP_016936125.1 flagellar basal body rod protein FlgC -
  JD965_RS08685 (JD965_08685) fliE 1650152..1650472 (+) 321 WP_016936124.1 flagellar hook-basal body complex protein FliE -
  JD965_RS08690 (JD965_08690) fliF 1650515..1652125 (+) 1611 WP_049628466.1 flagellar basal-body MS-ring/collar protein FliF -
  JD965_RS08695 (JD965_08695) fliG 1652138..1653154 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JD965_RS08700 (JD965_08700) fliH 1653147..1653899 (+) 753 WP_045926457.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=518501 JD965_RS08670 WP_013352252.1 1648166..1648945(+) (codY) [Bacillus siamensis strain B28]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=518501 JD965_RS08670 WP_013352252.1 1648166..1648945(+) (codY) [Bacillus siamensis strain B28]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCAGAAACGCTTCGCGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAACCTTTTC
AACGTTCCGGAGACATCTTCAAACCTTGATATCAACAGCGAATATACGGCTTTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACGACGATTGTGCCGATTATCGGCGGAGGAGAGCGCCTGGGCACATTGATTCTGTCCCGTCTGCAGGACC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCAGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTTTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTAGGCATTACCC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTCGAAAGCGCCGGCGTTATTGAATCCAGATCACTTGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAATAAATTCCTTATTGAATTGGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467