Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | JC776_RS16180 | Genome accession | NZ_CP066194 |
| Coordinates | 3151019..3151798 (+) | Length | 259 a.a. |
| NCBI ID | WP_012094920.1 | Uniprot ID | A7GRF8 |
| Organism | Bacillus cytotoxicus strain E8.1 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3106787..3175654 | 3151019..3151798 | within | 0 |
Gene organization within MGE regions
Location: 3106787..3175654
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JC776_RS15965 (JC776_15965) | rpoZ | 3106950..3107162 (+) | 213 | WP_012094966.1 | DNA-directed RNA polymerase subunit omega | - |
| JC776_RS15970 (JC776_15970) | coaBC | 3107361..3108566 (+) | 1206 | WP_012094965.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| JC776_RS15975 (JC776_15975) | priA | 3108563..3110968 (+) | 2406 | WP_012094963.1 | primosomal protein N' | - |
| JC776_RS15980 (JC776_15980) | def | 3110980..3111456 (+) | 477 | WP_012094962.1 | peptide deformylase | - |
| JC776_RS15985 (JC776_15985) | fmt | 3111473..3112417 (+) | 945 | WP_012094961.1 | methionyl-tRNA formyltransferase | - |
| JC776_RS15990 (JC776_15990) | rsmB | 3112414..3113748 (+) | 1335 | WP_012094960.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| JC776_RS15995 (JC776_15995) | rlmN | 3113753..3114841 (+) | 1089 | WP_012094959.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| JC776_RS16000 (JC776_16000) | - | 3114846..3115598 (+) | 753 | WP_012094958.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| JC776_RS16005 (JC776_16005) | pknB | 3115607..3117577 (+) | 1971 | WP_012094956.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| JC776_RS16010 (JC776_16010) | rsgA | 3117841..3118722 (+) | 882 | WP_087095238.1 | ribosome small subunit-dependent GTPase A | - |
| JC776_RS16015 (JC776_16015) | rpe | 3118725..3119369 (+) | 645 | WP_012094954.1 | ribulose-phosphate 3-epimerase | - |
| JC776_RS16020 (JC776_16020) | - | 3119475..3120116 (+) | 642 | WP_012094953.1 | thiamine diphosphokinase | - |
| JC776_RS16025 (JC776_16025) | spoVM | 3120183..3120263 (+) | 81 | WP_001213600.1 | stage V sporulation protein SpoVM | - |
| JC776_RS16030 (JC776_16030) | rpmB | 3120337..3120525 (-) | 189 | WP_012094952.1 | 50S ribosomal protein L28 | - |
| JC776_RS16035 (JC776_16035) | - | 3120899..3121261 (+) | 363 | WP_012094951.1 | Asp23/Gls24 family envelope stress response protein | - |
| JC776_RS16040 (JC776_16040) | - | 3121284..3122960 (+) | 1677 | WP_012094950.1 | DAK2 domain-containing protein | - |
| JC776_RS16045 (JC776_16045) | recG | 3123244..3125292 (+) | 2049 | WP_048721968.1 | ATP-dependent DNA helicase RecG | - |
| JC776_RS16050 (JC776_16050) | fapR | 3125381..3125974 (+) | 594 | WP_012094948.1 | transcription factor FapR | - |
| JC776_RS16055 (JC776_16055) | plsX | 3125971..3126963 (+) | 993 | WP_012094947.1 | phosphate acyltransferase PlsX | - |
| JC776_RS16060 (JC776_16060) | fabD | 3126978..3127928 (+) | 951 | WP_012094946.1 | ACP S-malonyltransferase | - |
| JC776_RS16065 (JC776_16065) | fabG | 3127922..3128662 (+) | 741 | WP_048721978.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| JC776_RS16070 (JC776_16070) | acpP | 3128744..3128977 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| JC776_RS16075 (JC776_16075) | rncS | 3129037..3129774 (+) | 738 | WP_012094944.1 | ribonuclease III | - |
| JC776_RS16080 (JC776_16080) | smc | 3129920..3133489 (+) | 3570 | WP_087095237.1 | chromosome segregation protein SMC | - |
| JC776_RS16085 (JC776_16085) | ftsY | 3133504..3134493 (+) | 990 | WP_012094942.1 | signal recognition particle-docking protein FtsY | - |
| JC776_RS16090 (JC776_16090) | - | 3134627..3134959 (+) | 333 | WP_012094941.1 | putative DNA-binding protein | - |
| JC776_RS16095 (JC776_16095) | ffh | 3134972..3136321 (+) | 1350 | WP_012094940.1 | signal recognition particle protein | - |
| JC776_RS16100 (JC776_16100) | rpsP | 3136423..3136695 (+) | 273 | WP_012094939.1 | 30S ribosomal protein S16 | - |
| JC776_RS16105 (JC776_16105) | - | 3136710..3136937 (+) | 228 | WP_012094938.1 | KH domain-containing protein | - |
| JC776_RS16110 (JC776_16110) | rimM | 3137059..3137574 (+) | 516 | WP_012094937.1 | ribosome maturation factor RimM | - |
| JC776_RS16115 (JC776_16115) | trmD | 3137574..3138308 (+) | 735 | WP_041810489.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| JC776_RS16120 (JC776_16120) | rplS | 3138456..3138800 (+) | 345 | WP_012094935.1 | 50S ribosomal protein L19 | - |
| JC776_RS16125 (JC776_16125) | lepB | 3138901..3139452 (+) | 552 | WP_012094933.1 | signal peptidase I | - |
| JC776_RS16130 (JC776_16130) | ylqF | 3139473..3140336 (+) | 864 | WP_012094932.1 | ribosome biogenesis GTPase YlqF | - |
| JC776_RS16135 (JC776_16135) | - | 3140392..3141171 (+) | 780 | WP_048721998.1 | ribonuclease HII | - |
| JC776_RS16140 (JC776_16140) | sucC | 3141359..3142519 (+) | 1161 | WP_048722001.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JC776_RS16145 (JC776_16145) | sucD | 3142539..3143441 (+) | 903 | WP_087095236.1 | succinate--CoA ligase subunit alpha | - |
| JC776_RS16150 (JC776_16150) | dprA | 3143529..3144398 (+) | 870 | WP_041809908.1 | DNA-processing protein DprA | - |
| JC776_RS16155 (JC776_16155) | topA | 3144543..3146621 (+) | 2079 | WP_012094926.1 | type I DNA topoisomerase | - |
| JC776_RS16160 (JC776_16160) | trmFO | 3146673..3147977 (+) | 1305 | WP_012094924.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| JC776_RS16165 (JC776_16165) | xerC | 3148043..3148942 (+) | 900 | WP_087095235.1 | tyrosine recombinase XerC | - |
| JC776_RS16170 (JC776_16170) | hslV | 3148986..3149528 (+) | 543 | WP_012094922.1 | ATP-dependent protease proteolytic subunit HslV | - |
| JC776_RS16175 (JC776_16175) | hslU | 3149551..3150942 (+) | 1392 | WP_012094921.1 | ATP-dependent protease ATPase subunit HslU | - |
| JC776_RS16180 (JC776_16180) | codY | 3151019..3151798 (+) | 780 | WP_012094920.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| JC776_RS16185 (JC776_16185) | rpsB | 3152246..3152947 (+) | 702 | WP_012094919.1 | 30S ribosomal protein S2 | - |
| JC776_RS16190 (JC776_16190) | tsf | 3153031..3153918 (+) | 888 | WP_012094918.1 | translation elongation factor Ts | - |
| JC776_RS16195 (JC776_16195) | pyrH | 3153985..3154707 (+) | 723 | WP_012094917.1 | UMP kinase | - |
| JC776_RS16200 (JC776_16200) | frr | 3154710..3155267 (+) | 558 | WP_012094916.1 | ribosome recycling factor | - |
| JC776_RS16205 (JC776_16205) | - | 3155353..3156129 (+) | 777 | WP_012094915.1 | isoprenyl transferase | - |
| JC776_RS16210 (JC776_16210) | - | 3156147..3156938 (+) | 792 | WP_012094914.1 | phosphatidate cytidylyltransferase | - |
| JC776_RS16215 (JC776_16215) | dxr | 3156959..3158101 (+) | 1143 | WP_087095234.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| JC776_RS16220 (JC776_16220) | rseP | 3158119..3159375 (+) | 1257 | WP_012094912.1 | RIP metalloprotease RseP | - |
| JC776_RS16225 (JC776_16225) | - | 3159524..3161224 (+) | 1701 | WP_012094911.1 | proline--tRNA ligase | - |
| JC776_RS16230 (JC776_16230) | - | 3161398..3165699 (+) | 4302 | WP_012094910.1 | PolC-type DNA polymerase III | - |
| JC776_RS16235 (JC776_16235) | rimP | 3166033..3166503 (+) | 471 | WP_012094909.1 | ribosome maturation factor RimP | - |
| JC776_RS16240 (JC776_16240) | nusA | 3166521..3167621 (+) | 1101 | WP_012094908.1 | transcription termination factor NusA | - |
| JC776_RS16245 (JC776_16245) | - | 3167633..3167905 (+) | 273 | WP_041809905.1 | YlxR family protein | - |
| JC776_RS16250 (JC776_16250) | - | 3167906..3168217 (+) | 312 | WP_017151266.1 | YlxQ family RNA-binding protein | - |
| JC776_RS16255 (JC776_16255) | infB | 3168222..3170291 (+) | 2070 | WP_087095232.1 | translation initiation factor IF-2 | - |
| JC776_RS16260 (JC776_16260) | - | 3170288..3170569 (+) | 282 | WP_012094904.1 | DUF503 family protein | - |
| JC776_RS16265 (JC776_16265) | rbfA | 3170585..3170941 (+) | 357 | WP_012094903.1 | 30S ribosome-binding factor RbfA | - |
| JC776_RS16270 (JC776_16270) | truB | 3171066..3171989 (+) | 924 | WP_048722032.1 | tRNA pseudouridine(55) synthase TruB | - |
| JC776_RS16275 (JC776_16275) | ribF | 3172033..3173004 (+) | 972 | WP_087095231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| JC776_RS16280 (JC776_16280) | rpsO | 3173106..3173375 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28843.11 Da Isoelectric Point: 4.8041
>NTDB_id=518413 JC776_RS16180 WP_012094920.1 3151019..3151798(+) (codY) [Bacillus cytotoxicus strain E8.1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQNLF
NVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGGERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQNLF
NVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGGERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=518413 JC776_RS16180 WP_012094920.1 3151019..3151798(+) (codY) [Bacillus cytotoxicus strain E8.1]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCTTTATTACAAAGCGCAGCAGGAAAACCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTATTCGTTGTGAGCCGTCGCGGTAAATTACTAGGATATGCAATCC
ATCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAGGAATATACACAAAACTTATTC
AACGTTACTGAAACATCTTCAAATTTAGATGTAAATAGCGAATATACAGCTTTCCCTGTAGAAAACAAAGATTTATTCGG
GCAAGGCTTAACGACAATCGTGCCAATCGTGGGCGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCGTG
AATTCTTAGATGATGATTTAATTCTTGCTGAGTACAGTGCAACTGTAGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAGATTGAAGAAGAAGCTCGCAGCAAAGCTGTTGTTCAAATGGCGATTAGCTCTCTATCTTACAGTGAGTTAGAAGCGAT
TGAACATATCTTTGAAGAGTTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATTGTGAATGCACTTCGTAAATTAGAAAGTGCGGGAGTAATTGAATCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAATGACAAATTCTTACACGAACTTGCAAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCTTTATTACAAAGCGCAGCAGGAAAACCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTATTCGTTGTGAGCCGTCGCGGTAAATTACTAGGATATGCAATCC
ATCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAGGAATATACACAAAACTTATTC
AACGTTACTGAAACATCTTCAAATTTAGATGTAAATAGCGAATATACAGCTTTCCCTGTAGAAAACAAAGATTTATTCGG
GCAAGGCTTAACGACAATCGTGCCAATCGTGGGCGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCGTG
AATTCTTAGATGATGATTTAATTCTTGCTGAGTACAGTGCAACTGTAGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAGATTGAAGAAGAAGCTCGCAGCAAAGCTGTTGTTCAAATGGCGATTAGCTCTCTATCTTACAGTGAGTTAGAAGCGAT
TGAACATATCTTTGAAGAGTTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATTGTGAATGCACTTCGTAAATTAGAAAGTGCGGGAGTAATTGAATCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAATGACAAATTCTTACACGAACTTGCAAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
83.012 |
100 |
0.83 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |