Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JC773_RS19610 Genome accession   NZ_CP066185
Coordinates   3860001..3860780 (-) Length   259 a.a.
NCBI ID   WP_012094920.1    Uniprot ID   A7GRF8
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3855001..3865780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS19585 (JC773_19585) - 3855670..3856446 (-) 777 WP_012094915.1 isoprenyl transferase -
  JC773_RS19590 (JC773_19590) frr 3856532..3857089 (-) 558 WP_012094916.1 ribosome recycling factor -
  JC773_RS19595 (JC773_19595) pyrH 3857092..3857814 (-) 723 WP_012094917.1 UMP kinase -
  JC773_RS19600 (JC773_19600) tsf 3857881..3858768 (-) 888 WP_012094918.1 translation elongation factor Ts -
  JC773_RS19605 (JC773_19605) rpsB 3858852..3859553 (-) 702 WP_012094919.1 30S ribosomal protein S2 -
  JC773_RS19610 (JC773_19610) codY 3860001..3860780 (-) 780 WP_012094920.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JC773_RS19615 (JC773_19615) hslU 3860857..3862248 (-) 1392 WP_012094921.1 ATP-dependent protease ATPase subunit HslU -
  JC773_RS19620 (JC773_19620) hslV 3862271..3862813 (-) 543 WP_012094922.1 ATP-dependent protease proteolytic subunit HslV -
  JC773_RS19625 (JC773_19625) xerC 3862857..3863756 (-) 900 WP_087095235.1 tyrosine recombinase XerC -
  JC773_RS19630 (JC773_19630) trmFO 3863822..3865126 (-) 1305 WP_048722010.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28843.11 Da        Isoelectric Point: 4.8041

>NTDB_id=518270 JC773_RS19610 WP_012094920.1 3860001..3860780(-) (codY) [Bacillus cytotoxicus strain PDT2.12]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQNLF
NVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGGERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=518270 JC773_RS19610 WP_012094920.1 3860001..3860780(-) (codY) [Bacillus cytotoxicus strain PDT2.12]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCTTTATTACAAAGCGCAGCAGGAAAACCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTATTCGTTGTGAGCCGTCGCGGTAAATTACTAGGATATGCAATCC
ATCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAGGAATATACACAAAACTTATTC
AACGTTACTGAAACATCTTCAAATTTAGATGTAAATAGCGAATATACAGCTTTCCCTGTAGAAAACAAAGATTTATTCGG
GCAAGGCTTAACGACAATCGTGCCAATCGTGGGCGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCGTG
AATTCTTAGATGATGATTTAATTCTTGCTGAGTACAGTGCAACTGTAGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAGATTGAAGAAGAAGCTCGCAGCAAAGCTGTTGTTCAAATGGCGATTAGCTCTCTATCTTACAGTGAGTTAGAAGCGAT
TGAACATATCTTTGAAGAGTTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATTGTGAATGCACTTCGTAAATTAGAAAGTGCGGGAGTAATTGAATCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAATGACAAATTCTTACACGAACTTGCAAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GRF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

83.012

100

0.83
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456