Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SSIL_RS08005 Genome accession   NC_018065
Coordinates   1592744..1595239 (+) Length   831 a.a.
NCBI ID   WP_041865863.1    Uniprot ID   -
Organism   Solibacillus silvestris StLB046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587744..1600239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSIL_RS07980 (SSIL_1495) - 1587822..1590017 (+) 2196 WP_008407672.1 RelA/SpoT family protein -
  SSIL_RS07985 (SSIL_1496) dtd 1590040..1590486 (+) 447 WP_008407671.1 D-aminoacyl-tRNA deacylase -
  SSIL_RS07990 (SSIL_1497) - 1590557..1590763 (+) 207 WP_231918654.1 YuzF family protein -
  SSIL_RS07995 (SSIL_1498) - 1590829..1591722 (+) 894 WP_008407669.1 manganese catalase family protein -
  SSIL_RS08000 (SSIL_1499) hisA 1591820..1592581 (-) 762 WP_041865862.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  SSIL_RS08005 (SSIL_1500) recD2 1592744..1595239 (+) 2496 WP_041865863.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SSIL_RS08010 (SSIL_1501) - 1595574..1596785 (+) 1212 WP_014823358.1 NupC/NupG family nucleoside CNT transporter -
  SSIL_RS08015 (SSIL_1502) yeiL 1596834..1597502 (-) 669 WP_014823359.1 transcriptional regulator YeiL -
  SSIL_RS08020 (SSIL_1503) - 1597607..1598755 (+) 1149 WP_008407659.1 MFS transporter -

Sequence

Protein


Download         Length: 831 a.a.        Molecular weight: 92500.02 Da        Isoelectric Point: 4.9269

>NTDB_id=51804 SSIL_RS08005 WP_041865863.1 1592744..1595239(+) (recD2) [Solibacillus silvestris StLB046]
MAENLNLFDVNKLFILGRPIVTIFHNATNMYSIVRVKIQETNIQYDEKEIIIVGYFPQLVNDEQYRFTGQLKSHPKYGMQ
FQIDTFEKEVPTTEQGIVHYLSSDLFSGVGRKTAETIVEKLGMDALTKILEDPSALDAVPRLSAEKKLHIRQTIEENLGL
ERVMVRLNDWGFGPQLGMKIYQAYREETIQLLTENPYRLIEEVEGVGFIRADELGAKLGITGNHPDRIKAAIFHVLTNAA
LSEGHVYLDAEMVLPMVKDMLEQSQRIEIPYEAISKAAIDMREESKICGEETRMYLPSLYFSEVGIASKINELKEKNKTA
ESFTKDEIRKAIGDIEEQYDVTYAPTQAQAIETAINSAVMILTGGPGTGKTTVVRGLVEVYAELHGLSLNPKTYAEKEEP
FPIVLAAPTGRAAKRLAESTGLPAMTIHRLLGFNGQEKDEETEREVVGRLIIIDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQIPTVELTDIYRQAEGSTIIEMAHQIKKGKVPDTLTAKTTDRSFIQAGAAQVTSVVTQ
IVKGALAKGQAIRDIQVLAPMYKGPAGIDNLNKEIQQLVNPNDGTRKELVFGDTIYRIGDKVLQLVNQPDNNVFNGDMGE
VISIIRAKETVEKQDLLIVSYDGIEVTYQRADLNQITLAYCCSIHKSQGSEFQTVIMPIVRGYSKMLRRNLLYTGITRAK
NFLILCGEPDVLASGLAKTDDLTRLTTLKARLNSEFVAEEKMEATPELEEKKAPVSEVKQIPSSEQLGLLNVSASHKIGE
SLPNHLTAETAPYIHPLIGMANISPYDFNEE

Nucleotide


Download         Length: 2496 bp        

>NTDB_id=51804 SSIL_RS08005 WP_041865863.1 1592744..1595239(+) (recD2) [Solibacillus silvestris StLB046]
ATGGCGGAAAATCTAAATTTGTTTGACGTAAATAAGCTCTTTATTTTAGGTCGACCGATTGTAACAATTTTTCATAATGC
AACGAATATGTACTCCATTGTTCGTGTCAAAATTCAAGAAACAAACATTCAGTATGACGAAAAAGAAATCATCATTGTTG
GCTACTTCCCGCAATTAGTCAATGATGAACAATACCGCTTTACAGGGCAGTTAAAAAGTCATCCGAAATACGGGATGCAA
TTTCAAATTGATACATTTGAAAAAGAAGTGCCGACAACCGAGCAAGGAATCGTCCATTATTTATCAAGTGATCTATTTTC
AGGTGTGGGCAGAAAAACGGCAGAGACAATTGTAGAAAAGCTCGGTATGGATGCTCTTACGAAAATACTGGAAGATCCGT
CAGCACTCGATGCTGTTCCCCGGTTATCTGCTGAAAAAAAATTACATATTCGCCAAACGATCGAGGAAAACCTTGGACTG
GAACGGGTGATGGTGCGGCTGAATGATTGGGGCTTTGGGCCACAGCTTGGGATGAAAATTTACCAGGCTTATCGGGAAGA
AACAATTCAGTTACTGACAGAAAACCCTTACCGTTTAATCGAGGAAGTGGAAGGGGTCGGTTTTATACGTGCCGATGAAC
TTGGTGCGAAGCTGGGTATTACGGGAAATCACCCGGATCGAATAAAGGCTGCCATTTTCCATGTACTGACAAATGCCGCA
TTATCAGAAGGACATGTTTATTTGGATGCGGAAATGGTGCTTCCAATGGTTAAAGATATGCTTGAACAAAGTCAGCGCAT
CGAAATCCCGTATGAAGCGATTTCGAAAGCGGCAATCGATATGCGTGAGGAATCGAAAATTTGCGGCGAGGAAACACGCA
TGTACTTACCGTCACTCTATTTTAGTGAAGTGGGTATTGCAAGTAAGATCAATGAACTGAAAGAAAAAAACAAAACAGCT
GAAAGTTTTACGAAAGATGAAATCCGAAAAGCAATTGGCGATATTGAAGAACAATATGATGTGACGTATGCGCCAACACA
GGCACAGGCAATTGAAACGGCAATCAATTCTGCCGTCATGATTTTAACAGGAGGACCCGGCACGGGAAAAACAACCGTTG
TACGAGGTTTGGTGGAAGTATATGCGGAACTTCACGGGTTATCATTAAATCCAAAAACATATGCTGAAAAAGAGGAACCG
TTTCCCATTGTCCTTGCAGCCCCAACAGGACGTGCAGCGAAAAGACTGGCGGAATCGACTGGCTTACCTGCTATGACAAT
ACACAGGCTGTTAGGCTTTAATGGTCAGGAAAAGGATGAAGAAACAGAGCGTGAAGTCGTAGGTCGTCTCATTATTATCG
ATGAAATGTCGATGGTTGATACATGGCTGGCACATCAACTGTTAAAAGCATTGCATGAAGATGTTCAAGTCGTTTTTGTA
GGGGATCAAGATCAGTTACCGCCTGTCGGTCCAGGGCAAGTCTTAAAGGATTTGCTTGCATCCAAACAAATTCCGACTGT
CGAATTAACAGATATATACCGTCAAGCGGAAGGTTCTACAATTATCGAGATGGCCCACCAAATCAAAAAAGGCAAAGTTC
CGGATACGTTGACTGCAAAAACAACGGACCGCTCGTTTATACAAGCTGGAGCTGCACAAGTAACGAGTGTTGTCACACAG
ATTGTAAAAGGTGCACTTGCGAAGGGACAGGCAATTCGAGATATTCAAGTATTGGCGCCAATGTACAAAGGACCTGCAGG
CATCGATAATTTAAATAAAGAAATCCAGCAGCTCGTCAATCCGAATGATGGGACGAGAAAAGAACTTGTTTTTGGTGATA
CGATTTATCGTATAGGGGACAAAGTGCTGCAGCTAGTGAATCAGCCGGATAATAATGTATTCAACGGGGATATGGGAGAA
GTAATTTCCATCATCCGTGCAAAGGAAACAGTGGAAAAGCAGGATTTGCTTATCGTCAGCTATGATGGGATCGAAGTAAC
ATATCAGCGTGCTGATTTAAATCAGATTACATTGGCCTATTGCTGTTCGATCCATAAATCGCAAGGCTCTGAATTTCAAA
CGGTCATTATGCCGATTGTTCGCGGCTATTCGAAAATGCTTCGAAGAAATTTACTGTATACAGGTATTACACGTGCTAAA
AACTTTTTAATATTATGTGGTGAGCCGGATGTACTGGCGAGCGGTTTAGCAAAAACAGATGATTTAACACGCTTAACAAC
ATTGAAGGCACGTTTAAATTCAGAATTTGTTGCTGAAGAAAAGATGGAAGCGACACCGGAATTGGAAGAGAAAAAGGCGC
CTGTAAGTGAAGTGAAACAAATTCCTTCATCAGAGCAGCTCGGCCTCTTGAATGTTTCGGCTTCACATAAGATCGGGGAA
TCCCTGCCAAATCACTTAACGGCAGAAACAGCACCATATATTCACCCATTAATTGGTATGGCAAATATATCGCCGTATGA
TTTCAACGAAGAATAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.655

92.178

0.495

Multiple sequence alignment