Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   JC624_RS01555 Genome accession   NZ_CP066124
Coordinates   325222..325863 (+) Length   213 a.a.
NCBI ID   WP_032004890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320222..330863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS01535 - 320266..320598 (+) 333 WP_227062604.1 DUF7709 family protein -
  JC624_RS01540 rrmA 320601..321425 (+) 825 WP_227062606.1 putative RNA methyltransferase -
  JC624_RS01545 ponA 321441..324002 (-) 2562 WP_068563960.1 penicillin-binding protein PBP1a -
  JC624_RS01550 pilM 324164..325222 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  JC624_RS01555 pilN 325222..325863 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  JC624_RS01560 pilO 325860..326612 (+) 753 WP_068563958.1 type 4a pilus biogenesis protein PilO Machinery gene
  JC624_RS01565 pilP 326623..327150 (+) 528 WP_068563956.1 pilus assembly protein PilP Machinery gene
  JC624_RS01570 pilQ 327213..329339 (+) 2127 WP_068563954.1 type IV pilus secretin PilQ Machinery gene
  JC624_RS01575 aroK 329351..329920 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23907.33 Da        Isoelectric Point: 5.4186

>NTDB_id=517564 JC624_RS01555 WP_032004890.1 325222..325863(+) (pilN) [Acinetobacter pittii strain 32292]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=517564 JC624_RS01555 WP_032004890.1 325222..325863(+) (pilN) [Acinetobacter pittii strain 32292]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685