Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I6H74_RS05305 Genome accession   NZ_CP066069
Coordinates   1071373..1072239 (+) Length   288 a.a.
NCBI ID   WP_046159387.1    Uniprot ID   A0A9X8XHZ8
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1066373..1077239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS05280 (I6H74_05275) atpD 1067409..1068815 (+) 1407 WP_003057452.1 F0F1 ATP synthase subunit beta -
  I6H74_RS05285 (I6H74_05280) - 1068828..1069244 (+) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  I6H74_RS05290 (I6H74_05285) - 1069573..1069809 (+) 237 WP_277997757.1 DUF1146 family protein -
  I6H74_RS05295 (I6H74_05290) murA 1069874..1071145 (+) 1272 WP_115256946.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6H74_RS05300 (I6H74_05295) - 1071149..1071337 (+) 189 WP_003057490.1 DNA-directed RNA polymerase subunit beta -
  I6H74_RS05305 (I6H74_05300) endA 1071373..1072239 (+) 867 WP_046159387.1 DNA/RNA non-specific endonuclease Machinery gene
  I6H74_RS05310 (I6H74_05305) pheS 1072522..1073565 (+) 1044 WP_046177175.1 phenylalanine--tRNA ligase subunit alpha -
  I6H74_RS05315 (I6H74_05310) pheT 1073775..1076180 (+) 2406 WP_046177174.1 phenylalanine--tRNA ligase subunit beta -
  I6H74_RS05320 (I6H74_05315) - 1076290..1076667 (+) 378 WP_046177173.1 OsmC family protein -
  I6H74_RS05325 (I6H74_05320) - 1076660..1077046 (+) 387 WP_046177172.1 DUF1722 domain-containing protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31916.95 Da        Isoelectric Point: 10.1381

>NTDB_id=517105 I6H74_RS05305 WP_046159387.1 1071373..1072239(+) (endA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVYSEVPTEALSASVLTKSIKEQ
LGSNIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=517105 I6H74_RS05305 WP_046159387.1 1071373..1072239(+) (endA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCATCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTGACCAAATCCATTAAGGAACAA
TTAGGTTCCAATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGTGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGACCACGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTCGGTGGACTGAAAGG
TTTTGATGCATCTACCAGTAATCCTGATAACATTGCTACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGATTAGTACGTCGTGCATTGGATAAGGGCAAAAGGGTCCGTTATCGTGTTACCTTGCTT
TATGATGGTGATAATCTGTTAGCCAGTGGCAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGTTGACGGTTGATTATCGAACAGGACAGATTGCCATTAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5