Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I6H72_RS03060 Genome accession   NZ_CP066055
Coordinates   606860..607711 (-) Length   283 a.a.
NCBI ID   WP_198458273.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 601860..612711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS03050 (I6H72_03050) - 603191..604960 (-) 1770 WP_198458271.1 ABC transporter ATP-binding protein -
  I6H72_RS03055 (I6H72_03055) - 604970..606706 (-) 1737 WP_198458272.1 ABC transporter ATP-binding protein -
  I6H72_RS03060 (I6H72_03060) endA 606860..607711 (-) 852 WP_198458273.1 DNA/RNA non-specific endonuclease Machinery gene
  I6H72_RS03065 (I6H72_03065) - 607919..608095 (-) 177 WP_003069742.1 DNA-directed RNA polymerase subunit beta -
  I6H72_RS03070 (I6H72_03070) murA 608088..609368 (-) 1281 WP_198458274.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6H72_RS03075 (I6H72_03075) - 609406..609636 (-) 231 WP_080564559.1 DUF1146 family protein -
  I6H72_RS03080 (I6H72_03080) - 609740..610159 (-) 420 WP_003069748.1 F0F1 ATP synthase subunit epsilon -
  I6H72_RS03085 (I6H72_03085) atpD 610170..611576 (-) 1407 WP_003025268.1 F0F1 ATP synthase subunit beta -
  I6H72_RS03090 (I6H72_03090) - 611611..612489 (-) 879 WP_003069751.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 31048.79 Da        Isoelectric Point: 10.3734

>NTDB_id=516836 I6H72_RS03060 WP_198458273.1 606860..607711(-) (endA) [Streptococcus constellatus strain FDAARGOS_1015]
MARKKSNQKVAQSVAGVFLALVLALGGYSFSNYHNHSSTKHSDSTAINRSIRKNYAAPSQELAQSVLTESVKQQLKGKIE
WNGAGAFIVNENKNDLDAKVGSIPYADNKTKLVRGRTVPTVANALLSKATRQYRNREETGNGSTTWTPAGWHQVKHLSGE
YHHAVDRGHLLGYALIANLKGFDASTSNPKNIVVQTAWANQANASHSTGQNFYETKVRKALDKNKRVRYRVTLIYASEQD
LVPVGSHIEAKSSDGSLEINVFVPNVQTGIRLNYQTGEVTVTN

Nucleotide


Download         Length: 852 bp        

>NTDB_id=516836 I6H72_RS03060 WP_198458273.1 606860..607711(-) (endA) [Streptococcus constellatus strain FDAARGOS_1015]
ATGGCGAGAAAGAAATCCAACCAGAAAGTAGCGCAAAGTGTAGCAGGCGTATTTCTTGCACTTGTTCTTGCGCTGGGAGG
TTATTCTTTTAGCAATTATCATAATCATAGCAGTACGAAGCATTCTGACAGCACTGCTATTAACAGGAGTATTCGTAAGA
ATTATGCAGCACCCAGTCAAGAATTAGCACAGAGCGTTTTAACAGAATCCGTCAAACAACAGCTCAAAGGGAAAATCGAG
TGGAATGGCGCAGGGGCTTTTATTGTCAATGAGAATAAAAATGATTTAGATGCTAAAGTGGGAAGTATTCCTTATGCGGA
TAATAAGACAAAATTGGTCAGAGGTCGAACTGTTCCAACGGTAGCAAATGCTCTTTTGTCCAAAGCTACTCGTCAGTATA
GGAATCGTGAAGAAACAGGTAATGGTTCAACAACTTGGACACCTGCTGGCTGGCATCAGGTGAAGCATTTATCGGGTGAA
TATCATCATGCAGTTGACCGTGGACATCTGCTAGGTTATGCCTTGATTGCTAACTTGAAAGGCTTTGATGCTTCGACTAG
CAATCCTAAAAATATTGTGGTGCAAACGGCTTGGGCGAATCAAGCAAATGCTAGCCATTCTACAGGTCAAAATTTTTATG
AAACGAAAGTACGTAAAGCTCTTGATAAAAATAAACGAGTTCGGTATCGAGTGACCTTGATTTACGCAAGTGAGCAGGAT
TTAGTACCGGTTGGTTCACATATTGAAGCCAAGTCTAGCGACGGTAGTTTGGAAATAAATGTCTTTGTGCCAAACGTACA
GACAGGAATTCGATTAAATTATCAGACAGGAGAAGTGACGGTCACCAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(114-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

77.876

79.859

0.622
  endA Streptococcus pneumoniae D39

77.876

79.859

0.622
  endA Streptococcus pneumoniae R6

77.876

79.859

0.622
  endA Streptococcus pneumoniae TIGR4

77.876

79.859

0.622