Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   I6I32_RS06625 Genome accession   NZ_CP066041
Coordinates   1358231..1359382 (+) Length   383 a.a.
NCBI ID   WP_001085517.1    Uniprot ID   A0A3R9NLQ2
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1353231..1364382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS06595 (I6I32_06595) ndk 1353589..1354008 (+) 420 WP_000438309.1 nucleoside-diphosphate kinase -
  I6I32_RS06600 (I6I32_06600) comM 1354143..1354766 (+) 624 WP_198464344.1 hypothetical protein Regulator
  I6I32_RS06605 (I6I32_06605) tsaE 1354848..1355291 (+) 444 WP_000556959.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  I6I32_RS06610 (I6I32_06610) - 1355281..1355802 (+) 522 WP_198464345.1 GNAT family N-acetyltransferase -
  I6I32_RS06615 (I6I32_06615) brpA 1355807..1356847 (+) 1041 WP_198464346.1 biofilm formation/cell division transcriptional regulator BrpA -
  I6I32_RS06620 (I6I32_06620) cinA 1356920..1358176 (+) 1257 WP_198464347.1 competence/damage-inducible protein A Machinery gene
  I6I32_RS06625 (I6I32_06625) recA 1358231..1359382 (+) 1152 WP_001085517.1 recombinase RecA Machinery gene
  I6I32_RS06630 (I6I32_06630) - 1359552..1359746 (+) 195 WP_000415528.1 PspC domain-containing protein -
  I6I32_RS06635 (I6I32_06635) - 1359876..1360430 (-) 555 WP_070656881.1 GNAT family N-acetyltransferase -
  I6I32_RS06640 (I6I32_06640) - 1360540..1361910 (+) 1371 WP_198464348.1 MATE family efflux transporter -
  I6I32_RS06645 (I6I32_06645) - 1362007..1362723 (+) 717 WP_000532894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  I6I32_RS06650 (I6I32_06650) - 1362774..1363478 (-) 705 WP_198464349.1 CD20-like domain-containing protein -
  I6I32_RS06655 (I6I32_06655) - 1363651..1364112 (+) 462 WP_198464350.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 40964.64 Da        Isoelectric Point: 4.8797

>NTDB_id=516673 I6I32_RS06625 WP_001085517.1 1358231..1359382(+) (recA) [Streptococcus oralis strain FDAARGOS_1075]
MAKKPTKKLDEIGKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGS
ENAKKYLADHPEIFDAIDHQVRVQYGLIEDEEGTTPTSVAEDLAPNQEVTLDLGDGLEIEIED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=516673 I6I32_RS06625 WP_001085517.1 1358231..1359382(+) (recA) [Streptococcus oralis strain FDAARGOS_1075]
ATGGCGAAAAAACCAACAAAAAAATTAGATGAAATTGGGAAAAAATTTGGAGCTGACCGTGAAAAAGCATTGAACGATGC
TCTTAAATTGATCGAAAAAGACTTTGGTAAAGGCTCGATCATGCGCTTGGGTGAGCGCGCGGAGCAAAAAGTTCAAGTGA
TGAGCTCAGGCTCATTGGCTCTGGATATTGCTCTTGGTTCAGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGA
CCAGAATCATCTGGTAAGACAACGGTTGCCCTTCACGCTGTTGCGCAAGCACAAAAAGAAGGCGGTATCGCTGCCTTTAT
CGATGCGGAACATGCTCTTGACCCAGCCTATGCCGCAGCCCTCGGTGTGAACATTGACGAATTGCTCTTGTCACAACCAG
ACTCAGGAGAGCAAGGTCTTGAAATTGCTGGAAAATTGATTGACTCAGGTGCAGTTGACCTTGTCGTTATCGACTCGGTT
GCGGCCCTTGTACCTCGTGCGGAAATTGATGGGGATATTGGAGACAGTCACGTTGGTTTGCAGGCTCGAATGATGAGCCA
GGCTATGCGTAAACTCGGTGCTTCTATCAATAAAACCAAGACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTG
GGGTCATGTTTGGAAATCCAGAAACAACACCTGGTGGACGTGCTTTGAAATTCTACGCTTCAGTCCGTTTGGATGTTCGT
GGAAGCACACAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAGGAAACCAAGATCAAGGTCGTGAAAAA
CAAGGTGGCTCCACCATTTAAGGAAGCCTTTGTTGAAATCATGTACGGAGAAGGAATCTCTAAGACTGGTGAGCTCTTGA
AGATTGCAAGTGATCTCGATATCATCCAAAAAGCGGGAGCATGGTACTCTTATAAGGGTGAAAAAATCGGACAAGGATCT
GAAAATGCTAAGAAATACTTGGCGGATCACCCAGAAATCTTTGATGCCATTGACCATCAAGTCCGTGTTCAATATGGCTT
GATTGAAGATGAAGAAGGGACAACTCCTACCTCTGTCGCTGAAGATCTAGCACCTAACCAAGAAGTAACGCTTGACCTAG
GCGACGGACTTGAAATCGAAATTGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A3R9NLQ2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

92.727

100

0.932

  recA Streptococcus mitis SK321

92.468

100

0.93

  recA Streptococcus pneumoniae R6

89.717

100

0.911

  recA Streptococcus pneumoniae TIGR4

89.717

100

0.911

  recA Streptococcus pneumoniae D39

89.717

100

0.911

  recA Streptococcus pneumoniae Rx1

89.717

100

0.911

  recA Streptococcus pyogenes NZ131

85.263

99.217

0.846

  recA Streptococcus mutans UA159

84.595

100

0.846

  recA Lactococcus lactis subsp. cremoris KW2

77.904

92.167

0.718

  recA Latilactobacillus sakei subsp. sakei 23K

67.246

90.078

0.606

  recA Bacillus subtilis subsp. subtilis str. 168

69.091

86.162

0.595

  recA Acinetobacter baumannii D1279779

60.234

89.295

0.538

  recA Vibrio cholerae strain A1552

59.593

89.817

0.535

  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.593

89.817

0.535

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

84.334

0.53

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

85.64

0.527

  recA Neisseria gonorrhoeae MS11

60.909

86.162

0.525

  recA Neisseria gonorrhoeae MS11

60.909

86.162

0.525

  recA Neisseria gonorrhoeae strain FA1090

60.909

86.162

0.525

  recA Glaesserella parasuis strain SC1401

61.92

84.334

0.522

  recA Acinetobacter baylyi ADP1

61.043

85.117

0.52

  recA Pseudomonas stutzeri DSM 10701

57.514

90.339

0.52

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.725

89.295

0.507

  recA Ralstonia pseudosolanacearum GMI1000

58.133

86.684

0.504

  recA Helicobacter pylori strain NCTC11637

57.143

85.901

0.491

  recA Helicobacter pylori 26695

57.143

85.901

0.491