Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I6H77_RS05360 Genome accession   NZ_CP066021
Coordinates   1094760..1096520 (+) Length   586 a.a.
NCBI ID   WP_000428385.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089760..1101520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS05340 (I6H77_05340) - 1090891..1091607 (+) 717 WP_000532891.1 YebC/PmpR family DNA-binding transcriptional regulator -
  I6H77_RS05345 (I6H77_05345) - 1091658..1092362 (-) 705 WP_000675584.1 CD20-like domain-containing protein -
  I6H77_RS05350 (I6H77_05350) - 1092556..1093017 (+) 462 WP_000360517.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6H77_RS05355 (I6H77_05355) rcrP 1093001..1094770 (+) 1770 WP_000731803.1 ABC transporter ATP-binding protein Regulator
  I6H77_RS05360 (I6H77_05360) rcrQ 1094760..1096520 (+) 1761 WP_000428385.1 ABC transporter ATP-binding protein Regulator
  I6H77_RS05365 (I6H77_05365) - 1096617..1097120 (+) 504 WP_000800954.1 phosphatase PAP2 family protein -
  I6H77_RS05370 (I6H77_05370) - 1097234..1097680 (+) 447 WP_000776577.1 LytTR family DNA-binding domain-containing protein -
  I6H77_RS05375 (I6H77_05375) - 1097686..1098360 (+) 675 WP_000725743.1 LiaF transmembrane domain-containing protein -
  I6H77_RS05380 (I6H77_05380) rpmB 1098465..1098653 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  I6H77_RS05385 (I6H77_05385) - 1098806..1099171 (+) 366 WP_000216434.1 Asp23/Gls24 family envelope stress response protein -
  I6H77_RS05390 (I6H77_05390) - 1099174..1100841 (+) 1668 WP_198456487.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64485.16 Da        Isoelectric Point: 5.1159

>NTDB_id=516483 I6H77_RS05360 WP_000428385.1 1094760..1096520(+) (rcrQ) [Streptococcus oralis strain FDAARGOS_1020]
MENKKVSVWKQCKPYMAGLQLPLLIAVVAAVISSIITVYGPTKIKEITNLISDGLATEIDLVAVSNIAGFLVVLYVFGAI
LNYTQAYIFSTSIQHFSKRLRTAIAEKINRLPLGYFDRHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSASFLLIAVLVTM
FGMNWILALVTVVSTLVGFAAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVDTSKARFAGLNQDLHDS
IWKSQFISGIMMPAMFFVGNFSYVLVIIVGAALALEGHITIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMTRVLE
FLAEAEMQDESHKERQLSDMKGEVVFDHVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYELDKGS
IRIDGVDTKDMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQTGISDERMIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HEELMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=516483 I6H77_RS05360 WP_000428385.1 1094760..1096520(+) (rcrQ) [Streptococcus oralis strain FDAARGOS_1020]
ATGGAAAATAAAAAAGTTTCGGTCTGGAAACAGTGCAAACCTTATATGGCAGGCCTCCAACTTCCTCTCCTAATAGCAGT
TGTGGCTGCAGTCATTTCAAGCATCATTACCGTTTATGGTCCAACTAAGATTAAAGAAATTACTAACTTGATTTCAGATG
GCTTGGCTACAGAAATCGACTTGGTAGCTGTGTCAAACATTGCTGGATTTTTGGTTGTCCTATATGTGTTTGGAGCTATC
CTTAATTATACACAGGCCTATATATTTTCAACGAGTATCCAACATTTTTCAAAACGCTTGCGGACGGCTATCGCTGAAAA
AATCAATCGTTTGCCACTTGGCTATTTTGACCGTCATTCACAAGGAGACACCCTTTCGCGCGTGACCAATGATGTGGATA
CAGCAGCGCAATCTCTCAACCAAAGTCTAGGGACAGTTCTTTCAGCTAGTTTCTTGTTGATTGCTGTCTTGGTGACCATG
TTTGGGATGAACTGGATTTTAGCTCTCGTAACAGTGGTCTCTACGCTTGTTGGTTTTGCGGCGGTTTCCGTAATCATGGC
CAAGTCACAGGGTTATTTTAAAGCCCAACAAAATAATCTAGCAGCCGTCAATGGTTATGTGGAAGAGATGTACTCTGGCC
ATAATGTAGTGACCAGCTACAACGCAGTGGACACCTCCAAAGCGAGATTTGCAGGGTTAAACCAAGACTTGCATGACAGT
ATCTGGAAATCTCAATTTATCTCTGGTATCATGATGCCAGCCATGTTCTTTGTTGGGAACTTTAGTTATGTCTTAGTCAT
CATCGTTGGGGCCGCGCTGGCGTTAGAAGGGCATATCACTATAGGGATTATCGTAGCCTTTATGGTTTACGTACGGACCT
TCTCCCAACCTCTGTCACAGATTGCCCAAGGGATTACGAGCCTGCAACAAGCGAGTGCAGCCATGACTCGTGTATTAGAA
TTTCTAGCTGAAGCTGAGATGCAGGATGAATCTCATAAGGAGAGACAATTGAGCGACATGAAAGGGGAAGTAGTCTTTGA
TCACGTGTCCTTTGGCTATACACCAGAGCGCACCATCATCCATGATTTTTCTGCGACAGCTCATGCAGGTCAAAAGGTCG
CAATCGTTGGACCGACTGGGGCTGGGAAGACAACCATTGTCAATCTTTTGATGAAGTTCTATGAGCTAGATAAGGGAAGT
ATCCGCATTGATGGTGTGGATACCAAGGACATGAAGCGCTCTGAAGTGCACGATGCCTTTTCAATGGTCTTGCAGGATAC
TTGGCTCTTTGAAGGAACCATTCGTGATAATCTCATCTACAACCAAACAGGGATTAGTGATGAACGAATGATTGAAGCCA
GCAAGGCAGTGGGAATCCACCACTTTATCATGACCTTGCCAGACGGCTACGATACGGTTTTGGATGACACTGTGACCTTG
TCTGTTGGGCAAAAACAACTCTTGACCATTGCTCGTGCACTTCTTAAGGATGCACCACTCTTGATTTTGGATGAAGCGAC
ATCTTCAGTCGACACACGTACAGAGGAGTTGATTCAAAAAGCCATGGATCGTTTGATGGAGGGTCGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACTATCCGTAATGCTGACTTGATTCTTGTCATGAAAGATGGGAATATCATCGAACAAGGCAAT
CATGAGGAACTAATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAGTTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.952

99.659

0.667