Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   KXE03_RS26230 Genome accession   NZ_CP080007
Coordinates   5725660..5726184 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain S-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5720660..5731184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXE03_RS26215 (KXE03_26205) aroB 5721788..5722894 (-) 1107 WP_074234676.1 3-dehydroquinate synthase -
  KXE03_RS26220 (KXE03_26210) aroK 5722944..5723462 (-) 519 WP_003095833.1 shikimate kinase AroK -
  KXE03_RS26225 (KXE03_26215) pilQ 5723474..5725606 (-) 2133 WP_003141780.1 type 4a pilus secretin PilQ Machinery gene
  KXE03_RS26230 (KXE03_26220) comL/pilP 5725660..5726184 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  KXE03_RS26235 (KXE03_26225) pilO 5726181..5726804 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  KXE03_RS26240 (KXE03_26230) pilN 5726801..5727397 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  KXE03_RS26245 (KXE03_26235) pilM 5727397..5728461 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  KXE03_RS26250 (KXE03_26240) - 5728646..5731117 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=516382 KXE03_RS26230 WP_003116136.1 5725660..5726184(-) (comL/pilP) [Pseudomonas aeruginosa strain S-1]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=516382 KXE03_RS26230 WP_003116136.1 5725660..5726184(-) (comL/pilP) [Pseudomonas aeruginosa strain S-1]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362