Detailed information NTG0516361

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: I6H93_RS05440
• Genome accession: NZ_CP066016
• Coordinates: 1126427..1127128 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain FDAARGOS_1036
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1121427..1132128

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H93_RS05410 (I6H93_05410)	-	1121734..1122177 (-)	444	WP_001246675.1	SRPBCC family protein	-
I6H93_RS05415 (I6H93_05415)	tadA	1122247..1122750 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
I6H93_RS05420 (I6H93_05420)	-	1122757..1123881 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
I6H93_RS05425 (I6H93_05425)	ung	1123878..1124591 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
I6H93_RS05430 (I6H93_05430)	-	1124642..1125238 (-)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
I6H93_RS05435 (I6H93_05435)	gspK	1125468..1126427 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
I6H93_RS05440 (I6H93_05440)	xcpW	1126427..1127128 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
I6H93_RS05445 (I6H93_05445)	xcpV	1127128..1127508 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
I6H93_RS05450 (I6H93_05450)	-	1127498..1128052 (-)	555	WP_000841373.1	type II secretion system protein	-
I6H93_RS05455 (I6H93_05455)	-	1128062..1128670 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
I6H93_RS05460 (I6H93_05460)	-	1128708..1129481 (-)	774	WP_000497300.1	TatD family hydrolase	-
I6H93_RS05465 (I6H93_05465)	-	1129499..1129840 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
I6H93_RS05470 (I6H93_05470)	-	1129852..1130832 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
I6H93_RS05475 (I6H93_05475)	kdsB	1130844..1131605 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=516361 I6H93_RS05440 WP_000594579.1 1126427..1127128(-) (xcpW) [Acinetobacter baumannii strain FDAARGOS_1036]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=516361 I6H93_RS05440 WP_000594579.1 1126427..1127128(-) (xcpW) [Acinetobacter baumannii strain FDAARGOS_1036]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983