Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I6H62_RS03640 Genome accession   NZ_CP065981
Coordinates   666450..668840 (-) Length   796 a.a.
NCBI ID   WP_101140271.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain FDAARGOS_1005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 661450..673840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H62_RS03620 (I6H62_03620) - 662515..662826 (-) 312 WP_041636040.1 DUF1292 domain-containing protein -
  I6H62_RS03625 (I6H62_03625) ruvX 662842..663261 (-) 420 WP_099482912.1 Holliday junction resolvase RuvX -
  I6H62_RS03630 (I6H62_03630) - 663254..663499 (-) 246 WP_012657162.1 IreB family regulatory phosphoprotein -
  I6H62_RS03635 (I6H62_03635) alaS 663579..666203 (-) 2625 WP_101140272.1 alanine--tRNA ligase -
  I6H62_RS03640 (I6H62_03640) recD2 666450..668840 (-) 2391 WP_101140271.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6H62_RS03645 (I6H62_03645) - 668843..669502 (-) 660 WP_101140270.1 tetratricopeptide repeat protein -
  I6H62_RS03650 (I6H62_03650) mnmA 669563..670678 (-) 1116 WP_012657166.1 tRNA 2-thiouridine(34) synthase MnmA -
  I6H62_RS03655 (I6H62_03655) - 670690..671817 (-) 1128 WP_198479551.1 cysteine desulfurase family protein -
  I6H62_RS03660 (I6H62_03660) - 671989..672984 (+) 996 WP_133453147.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90258.58 Da        Isoelectric Point: 4.5506

>NTDB_id=515892 I6H62_RS03640 WP_101140271.1 666450..668840(-) (recD2) [Macrococcoides caseolyticum strain FDAARGOS_1005]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIITHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDQVPKLSDEKKELIYSTIHDNQAIEKIM
IQLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVNPDRLVIALTELTEEHKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKNQVKEFEQ
SEVLMAIGELEALFEVSYAERQKDALITAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGHDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTKENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPDDAQIIFVGDQDQL
PSVGPGQVFKDMIDAHIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDIKKRYNDRSFIPCTSNQIPEVIEKIVCSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEITHAYCCSIHKSQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFCG
DVHAFNEGIKRIGNARFTSFYQFLIDYFNEDEINDKKQDDQGNILPFNVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=515892 I6H62_RS03640 WP_101140271.1 666450..668840(-) (recD2) [Macrococcoides caseolyticum strain FDAARGOS_1005]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGGACAATAACGAGAATATTATTCTATAACAATGATAATTT
CTATACTGTGCTGAAGGCTGAAGTGATTGAATCAAATGAAGATTTTGATGATGATGCTACGATTACAGGTTATCTCCCAC
AAATTGCAGAAGGCGATACATATACTTTTACCGGTAAGATTATAACGCATCCGAAGTATGGAAAGCAGCTCCAGGCGGAT
AAATTTGAGAAGGATATGCCACAGTCGCGTGATGGTATTATTCATTATTTATCAAGTGATTTGTTTAAAGGAGTCGGTAA
GAAAACAGCGAGAACGATTGTAGAAGTGCTTGGTGAAGATGCACTGAACATTATTCTTGATGATAAAAGTAGTCTTGACC
AGGTGCCGAAGTTATCAGATGAGAAGAAAGAATTAATCTATAGTACGATTCATGATAATCAGGCGATTGAGAAAATCATG
ATTCAGCTGAATGAATTTGGGTTCGGGCCGCAGCTTGCGATGAAGATTTATCAGTTCTATAAGGACGATACGCTGAAGGT
GATTAATGAATCTCCGTATCAACTCGTGATGGATATTGAAGGGATCGGATTTAATAAAGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCAGAGCGTCTGAAAGCAGCGCTCGTGTTTACGATAGAACAAGCCTCTAACCAGAATGGA
CATACATATATTCCGGACCAGGTATTACTTGAAACAAGCTTTAATCTACTGACGAAAAATGGCAGTCAAGTCAATCCTGA
TCGCCTCGTTATCGCACTCACTGAACTGACAGAGGAACATAAGCTCGTTGAACATGAGAAGAACATCTATATTCCAAGTC
TATTCTATTCTGAAACAAAAGCTGTACAAATATTGCATCGATTAATGAACCATAAGAATCAGGTGAAAGAGTTCGAACAG
TCAGAAGTATTGATGGCAATCGGAGAACTGGAAGCACTGTTTGAAGTCAGCTATGCAGAACGGCAGAAAGATGCGCTTAT
TACGGCGATGAACTCTAAGCTGATGATATTAACGGGTGGGCCTGGTACAGGAAAGACGACAGTCGTACGTGGTATTGTTA
ATTTATATGCCGAACTGCATGGCTTGAGTCTAGATTATGATGACTATGACGGACATGACTATCCGATTGTCGTCGCAGCA
CCGACTGGTCGTGCGTCAAAGCGTCTTCAGGAATCGACGGGACTTGAAGCGACGACGATACACAGGTTAATTGGATGGAC
GAAAGAAAATAAACCGGACGATGTGCTGGAAACCGAAATTACAGCGAAACTGGTCATTATTGATGAAATGTCAATGGTTG
ATACGTGGCTTATGTTTCAATTGATGAAGGCTGTACCTGACGATGCCCAGATTATATTTGTCGGTGACCAGGACCAGCTC
CCTTCGGTCGGTCCAGGTCAAGTATTTAAGGATATGATTGATGCACACATTATGCCGCAGATTGAGCTGAACGAGGTGTA
TAGACAGCAGGAAGGTTCCTCGATTGTCGAACTAGCACATCAGATTAAGCGCAATGAACCTTTTGACATTAAGAAAAGAT
ATAATGACAGAAGTTTTATACCGTGTACAAGCAACCAAATTCCGGAAGTGATTGAGAAAATTGTATGCAGCGCTGTGAAT
AAAGGATACGATATGCGTGACATACAAGTACTCGCACCGATATATAGGGGGCCAGCAGGTATACGTGCATTGAATAAAGT
ATTGCAGGAAATACTGAATCCAAGCGATGAAAACAAACGTGAACTGCAGTTTGGTGATGTTTATTTCAGAACGGGTGATA
AAGTTTTGCAGCTTGTCAATCGACCTGAAGATAATGTATTTAATGGTGATATCGGAGAAGTCACTGGTATATTTATGGCA
GCTGAGAATGCATTAAATAAAGATGTTGTGATTGTTGACTATGATGGCAGTGAAGTAACGTATACGAAAGCAGATTTAAT
GGAAATTACACATGCATATTGCTGTTCTATTCATAAGTCCCAAGGTTCGGAATTTCCGATAGTAATCATGCCTGTAGTCA
ATCAGTACTACAGAATGTTGCAGAAGAATATTCTGTATACGGGATTAACACGTGCAAAACAATCCCTGATATTCTGTGGA
GATGTTCACGCTTTTAATGAAGGGATTAAGCGTATCGGTAATGCAAGATTTACAAGCTTCTATCAGTTTCTAATCGATTA
TTTTAACGAAGACGAAATAAATGACAAAAAGCAAGATGACCAAGGTAATATACTACCTTTCAACGTGGGGGAGATGACTG
AAGACAATATGCATCTTGTTGATCCGATGATCAATATGGAAGGTATAACACCATATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

AAA domain (AAA_30)

(338-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.936

100

0.513