Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   KZH42_RS07325 Genome accession   NZ_CP079941
Coordinates   1414531..1415148 (-) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain C311     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1409531..1420148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH42_RS07305 (KZH42_07300) recD 1410244..1411989 (-) 1746 WP_002225198.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KZH42_RS07310 (KZH42_07305) lolD 1412057..1412752 (-) 696 WP_002225197.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KZH42_RS07315 (KZH42_07310) - 1412745..1413992 (-) 1248 WP_002225196.1 lipoprotein-releasing ABC transporter permease subunit -
  KZH42_RS07320 (KZH42_07315) - 1414197..1414475 (+) 279 WP_002213502.1 hypothetical protein -
  KZH42_RS07325 (KZH42_07320) recR 1414531..1415148 (-) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  KZH42_RS07330 (KZH42_07325) - 1415215..1416753 (-) 1539 WP_002225194.1 SurA N-terminal domain-containing protein -
  KZH42_RS07335 (KZH42_07330) - 1416813..1417187 (-) 375 WP_002225193.1 arsenate reductase -
  KZH42_RS07340 (KZH42_07335) - 1417337..1418965 (+) 1629 WP_002222421.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=515872 KZH42_RS07325 WP_002217147.1 1414531..1415148(-) (recR) [Neisseria meningitidis strain C311]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=515872 KZH42_RS07325 WP_002217147.1 1414531..1415148(-) (recR) [Neisseria meningitidis strain C311]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366