Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JCQ35_RS03280 Genome accession   NZ_CP065960
Coordinates   608762..611152 (+) Length   796 a.a.
NCBI ID   WP_198472033.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDK8D55P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 603762..616152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCQ35_RS03260 (JCQ35_03260) sal(A) 604069..605694 (+) 1626 WP_198472030.1 ABC-F type ribosomal protection protein Sal(A) -
  JCQ35_RS03265 (JCQ35_03265) - 605754..606902 (+) 1149 WP_198472031.1 cysteine desulfurase family protein -
  JCQ35_RS03270 (JCQ35_03270) mnmA 606895..608004 (+) 1110 WP_198472032.1 tRNA 2-thiouridine(34) synthase MnmA -
  JCQ35_RS03275 (JCQ35_03275) - 608091..608759 (+) 669 WP_037588401.1 tetratricopeptide repeat protein -
  JCQ35_RS03280 (JCQ35_03280) recD2 608762..611152 (+) 2391 WP_198472033.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JCQ35_RS03285 (JCQ35_03285) alaS 611402..614032 (+) 2631 WP_198472034.1 alanine--tRNA ligase -
  JCQ35_RS03290 (JCQ35_03290) - 614100..614369 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  JCQ35_RS03295 (JCQ35_03295) ruvX 614362..614790 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  JCQ35_RS03300 (JCQ35_03300) - 614810..615115 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90484.55 Da        Isoelectric Point: 4.5644

>NTDB_id=515731 JCQ35_RS03280 WP_198472033.1 608762..611152(+) (recD2) [Mammaliicoccus sciuri strain GDK8D55P]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDFEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKLYFDTDDEEDTESETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=515731 JCQ35_RS03280 WP_198472033.1 608762..611152(+) (recD2) [Mammaliicoccus sciuri strain GDK8D55P]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTAACAAACCATCCGAAATACGGTAAACAACTACAAGCTGAA
ACATTTGAAAAAGAATTGCCACAAACAAAACAAGGTGTTATTCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATAGTGGACAAACTTGGTGAAGATGCACTTCAGAAAATTATAGATGACCCGGATGTCCTTAAAG
AAATACCTAAACTCAATAAGCAAAAAAGAGACACGATTGCAGAATCCATACGTGAAAATCAAGCCATTGAACGCATTATG
ATTAAACTTAATGAACTTGGTTTCGGACCGAAACTTGCGATGGCAATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAGCAATCGCCATATCGTTTAGTGATGGATATTAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCTGAACAAG
TTGGAATTTCTAAAGACCATCATGACCGACTTGTAGCAGGTGTGAGTTACTTTTTAGACCAACAATCATTACAGAATGGT
CATACATTTTTACCTGTTGATATTTTGGTCAATGGGGCATATGAATTGTTAAATCATAATCAACCTGAAGTTGTAAATAA
AGATCAGATTAATGGTGTCATTATCGAAATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATTATTCATAGACTTTATCAACATCAAGATGAACTTAAAGAAATTGAG
AAAAGTGACCTTCAATTACATATCGGACAAATTGAAGATATGAATGATGTTTCATATGCAGATGGACAAAAATTAGCGTT
AGAAACAGCTATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACAACCGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACATGGTGTGAGTTTGAATTATGATGATTATCAAGAAGGAACAGATTTTCCAATTGTATTA
GCAGCACCGACTGGACGTGCAGCAAAGCGTTTAAGTGAATCAACTGGACTAGAAGCGATGACAATTCATAGATTAATTGG
ATGGAGTAAAGATACGCAACCGGATGATGTGTTAGATAATGATATTCATGCTCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTATCAATTTTTAAGAGCAGTTCCTGATTATGCTCAAATCATATTTGTAGGTGATGAAGAT
CAATTACCATCAGTTGGACCAGGTCAGATTTTTAAAGATTTGATTGATTCTAAAGTTATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCTATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATCAATG
AAAAACATCACGACCGTTCATTTATTCCGTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTTCAAGGTGCC
GTTAATAAAGGATATAATATGCAAGATATTCAAGTGCTAGCTCCAATTTACCGTGGGCCAGCTGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTCCTTCAATATGGTGATTTTGAATATCGTGAAA
ATGATAAAGTACTACAACTTATTAATCGACCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTCGTCATTGTGGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACGCATGCTTATTGTTGTTCAATTCATAAATCACAAGGGTCGGAATTCCCGATAGTCATCATGCCTA
TCGTCAGACAATATTTTAGAATGTTACAAAAGAACATTCTATATACTGGACTTACACGTGCGAAACAGTCGCTTGTTGTG
TGCGGTGAAGAACAAGCCTTTAATCAAGGTATTCAAACGCTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
ATTGTATTTTGATACTGATGATGAAGAAGATACGGAGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATAGATCCAATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.565

100

0.501