Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   KZH40_RS02295 Genome accession   NZ_CP079921
Coordinates   499978..501318 (+) Length   446 a.a.
NCBI ID   WP_005619028.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain P1875     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 494978..506318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH40_RS02270 (KZH40_02295) msrB 495441..495836 (-) 396 WP_005619026.1 peptide-methionine (R)-S-oxide reductase MsrB -
  KZH40_RS02275 (KZH40_02300) gap 496059..497063 (+) 1005 WP_005619027.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  KZH40_RS02280 (KZH40_02305) - 497259..498311 (+) 1053 WP_005607179.1 rod shape-determining protein -
  KZH40_RS02285 (KZH40_02310) mreC 498428..499477 (+) 1050 WP_005600525.1 rod shape-determining protein MreC -
  KZH40_RS02290 (KZH40_02315) mreD 499477..499965 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  KZH40_RS02295 (KZH40_02320) rarA 499978..501318 (+) 1341 WP_005619028.1 replication-associated recombination protein A Machinery gene
  KZH40_RS02300 (KZH40_02325) znuB 501399..502184 (+) 786 WP_005596508.1 zinc ABC transporter permease subunit ZnuB -
  KZH40_RS02305 (KZH40_02330) - 502364..503161 (+) 798 WP_005596509.1 class II glutamine amidotransferase -
  KZH40_RS02310 (KZH40_02335) metX 503241..504317 (-) 1077 WP_005619029.1 homoserine O-acetyltransferase MetX -
  KZH40_RS02315 (KZH40_02340) - 504609..505298 (+) 690 WP_005619030.1 SanA/YdcF family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50198.93 Da        Isoelectric Point: 7.1135

>NTDB_id=515523 KZH40_RS02295 WP_005619028.1 499978..501318(+) (rarA) [Actinobacillus pleuropneumoniae strain P1875]
MSSLSFDFSADFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKRLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLKAQDQASLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=515523 KZH40_RS02295 WP_005619028.1 499978..501318(+) (rarA) [Actinobacillus pleuropneumoniae strain P1875]
ATGAGTAGTTTGTCCTTTGATTTTTCAGCAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGGAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCTCATTCCATGATCT
TCTGGGGGCCTCCCGGTACCGGTAAAACGACATTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAAGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACACCGTTTTAATAAAAGCCAACAAGATGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTATGTAAATGGGGATGCAAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACGCCTGAATAAAGCGTTATTGGCTGAAGTTTTAGGA
GAGCGACAAGCGCGCTTTGATAAAGGTGGTGATCGTTATTATGATTTGATTTCAGCATTGCATAAATCGGTACGAGGCTC
ATCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGAGATCCTTTGTATGTTGCGCGCCGATTAC
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTGGCGGTTGCGCCAAAAAGCAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTACGGTGAAGAATATCGTTATGCGCACCACGAACCGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCACCCGACGGAACGGGGAATGGAAAAGCAAATTAAGGA
AAAATTGCAGTGGCTTAAAGCACAGGATCAAGCCAGCTTACAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.898

94.843

0.388