Detailed information NTG0515100

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I9X29_RS25370
• Genome accession: NZ_CP065867
• Coordinates: 5455237..5456109 (+)
• Length: 290 a.a.
• NCBI ID: WP_198340918.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain TJ2014-049
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5450237..5461109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I9X29_RS25355 (I9X29_25355)	-	5451620..5452084 (-)	465	WP_021205141.1	pilin	-
I9X29_RS25360 (I9X29_25360)	pilB	5452315..5454015 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I9X29_RS25365 (I9X29_25365)	pilC	5454019..5455236 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
I9X29_RS25370 (I9X29_25370)	pilD	5455237..5456109 (+)	873	WP_198340918.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
I9X29_RS25375 (I9X29_25375)	coaE	5456106..5456717 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
I9X29_RS25380 (I9X29_25380)	yacG	5456714..5456914 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
I9X29_RS25385 (I9X29_25385)	-	5456951..5457160 (-)	210	WP_003094660.1	hypothetical protein	-
I9X29_RS25390 (I9X29_25390)	-	5457266..5457955 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
I9X29_RS25395 (I9X29_25395)	-	5457952..5458422 (-)	471	WP_003094664.1	hypothetical protein	-
I9X29_RS25400 (I9X29_25400)	-	5458419..5458844 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
I9X29_RS25405 (I9X29_25405)	-	5458977..5459606 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
I9X29_RS25410 (I9X29_25410)	-	5459603..5460052 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
I9X29_RS25415 (I9X29_25415)	-	5460078..5460248 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31874.93 Da
• Isoelectric Point: 7.7068

>NTDB_id=515100 I9X29_RS25370 WP_198340918.1 5455237..5456109(+) (pilD) [Pseudomonas aeruginosa strain TJ2014-049]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLTMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNVESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=515100 I9X29_RS25370 WP_198340918.1 5455237..5456109(+) (pilD) [Pseudomonas aeruginosa strain TJ2014-049]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATACTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCGCTGTGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGACGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAATGTCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.177	97.586	0.49
pilD	Acinetobacter baumannii D1279779	50.177	97.586	0.49
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476