Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SSUST1_RS03955 Genome accession   NC_017950
Coordinates   801267..802106 (+) Length   279 a.a.
NCBI ID   WP_014735752.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 796267..807106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS03925 (SSUST1_0785) - 796732..797610 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  SSUST1_RS03930 (SSUST1_0786) atpD 797630..799036 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  SSUST1_RS03935 (SSUST1_0787) - 799046..799462 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  SSUST1_RS03940 (SSUST1_0788) - 799522..799746 (+) 225 WP_024387485.1 DUF1146 family protein -
  SSUST1_RS03945 (SSUST1_0789) murA 799770..801053 (+) 1284 WP_014735751.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SSUST1_RS03950 (SSUST1_0790) - 801046..801237 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  SSUST1_RS03955 (SSUST1_0791) endA 801267..802106 (+) 840 WP_014735752.1 DNA/RNA non-specific endonuclease Machinery gene
  SSUST1_RS03960 (SSUST1_0792) - 802293..803846 (+) 1554 WP_014735753.1 MFS transporter -
  SSUST1_RS03965 (SSUST1_0793) - 803902..804930 (+) 1029 WP_014735754.1 sugar kinase -
  SSUST1_RS03970 (SSUST1_0794) uidA 804946..806745 (+) 1800 WP_014735755.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30159.40 Da        Isoelectric Point: 6.2370

>NTDB_id=51476 SSUST1_RS03955 WP_014735752.1 801267..802106(+) (endA) [Streptococcus suis ST1]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLIEDVKKQLGNSIEWNSA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWAPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLTINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=51476 SSUST1_RS03955 WP_014735752.1 801267..802106(+) (endA) [Streptococcus suis ST1]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTGGCGGGGGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCGAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGATAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATAGCGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAGACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGGCACCTGCGGGTTGGCATCAAATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAAAATTATTTTGAAAGTCAGATTC
GGCGTGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCTTAGAGTTCAATGTGTTCGTTCCAAATGTTCAGAGCGGTCTCAC
TATCAATTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.068

84.588

0.584
  endA Streptococcus pneumoniae D39

69.068

84.588

0.584
  endA Streptococcus pneumoniae R6

69.068

84.588

0.584
  endA Streptococcus pneumoniae TIGR4

69.068

84.588

0.584

Multiple sequence alignment