Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I7831_RS08680 Genome accession   NZ_CP065797
Coordinates   1751922..1754306 (+) Length   794 a.a.
NCBI ID   WP_041080574.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain GDY8P168P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1746922..1759306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7831_RS08660 (I7831_08660) sal 1747171..1748802 (+) 1632 WP_198065247.1 Sal family ABC-F type ribosomal protection protein -
  I7831_RS08665 (I7831_08665) - 1748863..1750005 (+) 1143 WP_041080572.1 cysteine desulfurase family protein -
  I7831_RS08670 (I7831_08670) mnmA 1750006..1751118 (+) 1113 WP_002483117.1 tRNA 2-thiouridine(34) synthase MnmA -
  I7831_RS08675 (I7831_08675) - 1751253..1751918 (+) 666 WP_115352934.1 tetratricopeptide repeat protein -
  I7831_RS08680 (I7831_08680) recD2 1751922..1754306 (+) 2385 WP_041080574.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I7831_RS08685 (I7831_08685) alaS 1754655..1757285 (+) 2631 WP_069822033.1 alanine--tRNA ligase -
  I7831_RS08690 (I7831_08690) - 1757355..1757615 (+) 261 WP_002483121.1 IreB family regulatory phosphoprotein -
  I7831_RS08695 (I7831_08695) ruvX 1757619..1758047 (+) 429 WP_011302969.1 Holliday junction resolvase RuvX -
  I7831_RS08700 (I7831_08700) - 1758064..1758396 (+) 333 WP_194375716.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89397.02 Da        Isoelectric Point: 4.5639

>NTDB_id=514675 I7831_RS08680 WP_041080574.1 1751922..1754306(+) (recD2) [Staphylococcus saprophyticus strain GDY8P168P]
MGDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESSETFDSMPTIVGFFPEIAEGDVYTFKGQVVTHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAINDILNDPSVLEQVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDTERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTQDMLSQAPSEIIEMQQLNHVLQELVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNYAYTNKLKQIE
QSDLLMKIGEIEERNQVNYANSQKDALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLNYDDYQNDDYPVVLG
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCNTDQIPTVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNMVLQDILNPKDKDTREIEFGDVLFRKGDKVLQLVNRPNDNIFNGDIGVIVGVFW
AKENALNKDVLVVDFEGNEITFVRQDIIELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCTFLKAYFNNDASTEEEISDTFDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=514675 I7831_RS08680 WP_041080574.1 1751922..1754306(+) (recD2) [Staphylococcus saprophyticus strain GDY8P168P]
ATGGGAGACCCTACACTATTTAATAATTCAATGATTAAAGGAACCGTTGATGCGATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACAATTGAGTCAAGTGAAACATTTGATTCAATGCCTACGATTGTAGGGTTTTTCCCAG
AAATTGCTGAAGGTGATGTTTATACATTCAAAGGCCAAGTTGTTACACATCCGAAGTATGGTAAACAACTTAAAGCTGAA
ACGTTTGAAAAAGAATTACCACAAACTAAAGAGGCAATTATTAGTTATTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAAACTGCGCAAAGTATTGTTAATAAACTAGGTGAAAATGCTATAAACGATATCTTGAATGACCCGTCGGTATTAGAGC
AAGTACCTGGTTTACCTAAGAAAAAGCAAAAACAAATTGCTGAACAAATTGCTAGTAATCAAGAGACGGAGCAAATTATC
ATACGCTTACATGATTTAGGGTTTGGACCAAAACTAGCTATGGCGATTTACCAAGCGTATTTAGGAGAAACACTTAATGT
TGTTGAAAATAAACCCTACCAACTCGTATATGATGTAAAAGGAATTGGATTTAATAAAGCTGATACCTTAGCACGAAATG
TTGGAATCCAGTTCAATGATACAGAAAGACTAAAAGCGGGTTTGTTATATGTACTTGAAGAGGAATGTATTAAGCAAGGA
CATACATATTTACCTACTCAAAATGTATTAGAAATGACTCAAGATATGCTTTCTCAAGCACCTAGTGAAATAATAGAAAT
GCAACAATTGAATCATGTATTACAAGAATTGGTAAATGATACCAAACTCATTCAACAAGAAAATGAAGTTGCAATTCCGA
GTTTATATTATTCAGAATTAAAAAGTGTGCAGAATCTTTATCGCAATTATGCGTATACGAATAAACTCAAACAAATAGAA
CAGTCTGATCTTTTAATGAAGATTGGAGAAATTGAAGAGCGCAATCAAGTTAATTATGCAAATTCACAAAAAGATGCGTT
ACAGACTGCTATTAATTCTAAAATTATGTTACTCACAGGTGGTCCTGGTACAGGTAAAACAACTGTGATAAAAGGTATTG
TAGAATTATATGCAGAAATTCATGGTCTCTCATTAAATTATGATGATTATCAAAATGATGATTATCCAGTCGTATTAGGT
GCGCCTACAGGAAGAGCTTCAAAGCGTTTGGCAGAGTCGACAGGTTTAGAAGCCATGACAATTCATCGCTTAATCGGATG
GAATCAGGATACACAACCGGAAGATATTTTAGATAATGAAATATCAGCAAAATTAATTATCATTGATGAGATGTCTATGG
TTGATACATGGCTGTTCCACCAATTTTTAAGTGCAGTTCCAATAGATGCACAAATCATTTTAGTAGGTGATGAAGATCAA
TTGCCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGATTCAAAAGTGATTCCTCGTGTTAATTTAACAGAAGT
TTATAGACAACAAGATGGTTCTAGTATTATTGAATTAGCGCATCGGATGAAACTAGGTGAACCGATTGATATAACCCAAC
GTTTTCATGATCGAAATTTTATAAATTGTAATACAGATCAGATTCCGACAGTTGTGGAAAAAGTTGTTTCAAGCGCTGTG
AATAAAGGCTATGATATGAGTGATATTCAAGTGCTTGCACCAATGTATAAAGGGTCAGCAGGCATAAAAAAACTTAATAT
GGTATTACAAGATATTTTAAATCCTAAGGATAAAGATACACGTGAAATAGAATTTGGTGATGTGCTTTTTAGAAAAGGTG
ACAAAGTCTTGCAACTTGTAAATAGGCCTAATGATAATATTTTCAACGGTGATATTGGTGTAATCGTGGGTGTTTTTTGG
GCAAAAGAAAATGCGTTGAACAAAGATGTATTAGTCGTTGATTTTGAAGGTAATGAAATTACTTTTGTTCGTCAAGATAT
AATAGAATTAACTCATGCTTATTGTACGTCGATCCATAAATCACAAGGTTCTGAATTCCCAATAGTCATCATGCCTATGG
TAAAACAATACTTTAGAATGCTACAAAAGCCCATATTATATACTGGCTTAACAAGGGCTAAACAATCCCTTGTCTTTTTA
GGTGATCCGCAAGCCTTTGATATTGGTTTAAAAACGCATGGACAAGTGAGAATGACACAGTTATGCACATTTTTAAAAGC
CTACTTTAATAACGATGCATCTACTGAAGAAGAAATCAGCGACACATTTGATGCTGATATCATTCTAACTGAAGACAATA
TTTTTAAAATTAACCCAATGATTAATATGGGAGATATTTCCCCATATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix domain (HHH_5)

(103-149)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.134

100

0.511