Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KX728_RS06795 Genome accession   NZ_CP079724
Coordinates   1377001..1377789 (-) Length   262 a.a.
NCBI ID   WP_000940725.1    Uniprot ID   A0ABU5G4H7
Organism   Streptococcus oralis strain 34     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372001..1382789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS06770 (KX728_06765) vex3 1372150..1373529 (-) 1380 WP_061087752.1 ABC transporter permease subunit Vex3 -
  KX728_RS06775 (KX728_06770) vex2 1373838..1374470 (-) 633 WP_050242291.1 ABC transporter ATP-binding subunit Vex2 -
  KX728_RS06780 (KX728_06775) - 1374589..1375866 (-) 1278 WP_215804460.1 ABC transporter permease -
  KX728_RS06790 (KX728_06785) - 1376426..1377001 (-) 576 WP_096753642.1 cysteine hydrolase family protein -
  KX728_RS06795 (KX728_06790) codY 1377001..1377789 (-) 789 WP_000940725.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KX728_RS06800 (KX728_06795) - 1378072..1379649 (-) 1578 WP_215804459.1 DEAD/DEAH box helicase -
  KX728_RS06805 (KX728_06800) - 1379999..1381315 (+) 1317 WP_215804458.1 FAD-containing oxidoreductase -
  KX728_RS09370 - 1381480..1381965 (+) 486 WP_223335589.1 hypothetical protein -
  KX728_RS09375 - 1381982..1382683 (+) 702 WP_223335588.1 hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29683.04 Da        Isoelectric Point: 5.2488

>NTDB_id=514641 KX728_RS06795 WP_000940725.1 1377001..1377789(-) (codY) [Streptococcus oralis strain 34]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNNKGRLLGYFMRYKTNNDRVEQFFQTKTFPEVYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIGDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=514641 KX728_RS06795 WP_000940725.1 1377001..1377789(-) (codY) [Streptococcus oralis strain 34]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACTTCCATCTTGAAGCGCTCTGAGGAGCAACTTCAAGATGAACTTCC
TTACAATGCGATTACACGCCAGTTAGCTGATATTATTGACTGTAACGCTTGTATTGTGAATAACAAGGGACGTCTCTTGG
GTTACTTTATGCGTTATAAGACCAATAATGACCGTGTAGAACAATTCTTCCAAACCAAAACCTTCCCTGAGGTCTATGTA
CAAGGGGCAAACATGATTTATGACACGGAAGCCAATCTTCCTGTTGAACATGATTTGACCATTTTCCCTGTAGAGAGTCG
TGCGGACTTTCCAGATGGGTTGACAACCATCGCTCCGATTCATGTATCAGGGATTCGTCTAGGTTCCTTGATCATTTGGC
GCAATGACAAGAAATTTGAAGATGAAGATTTGATCCTTGTCGAGATTGCGAGCACGGTTGTGGGAATTCAACTGTTGAAC
TTCCAACGTGAAGAAGATGAGAAGAATATTCGCCGTCGTACGGCTGTTACCATGGCGGTCAACACCCTTTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAATTGGATGGAAATGAAGGGCAGCTGACTGCGTCTGTTATTGCAGACCGTA
TTGGCATTACACGCTCAGTGATTGTCAATGCGCTTCGTAAACTGGAGTCAGCGGGAATTATTGAGAGTCGTTCATTAGGA
ATGAAGGGGACTTATCTCAAAGTTCTAATTGGTGATATTTTTGAGGAAGTGAAAAAGAGGGATTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

63.359

100

0.634
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473