Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I8N72_RS08295 Genome accession   NZ_CP065790
Coordinates   1638561..1639340 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain LBUM1082     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633561..1644340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N72_RS08275 (I8N72_08275) trmFO 1634248..1635555 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I8N72_RS08280 (I8N72_08280) xerC 1635625..1636542 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  I8N72_RS08285 (I8N72_08285) hslV 1636558..1637103 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  I8N72_RS08290 (I8N72_08290) hslU 1637120..1638523 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  I8N72_RS08295 (I8N72_08295) codY 1638561..1639340 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I8N72_RS08300 (I8N72_08300) flgB 1639694..1640083 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  I8N72_RS08305 (I8N72_08305) flgC 1640083..1640535 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  I8N72_RS08310 (I8N72_08310) fliE 1640546..1640866 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  I8N72_RS08315 (I8N72_08315) fliF 1640909..1642519 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  I8N72_RS08320 (I8N72_08320) fliG 1642532..1643548 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  I8N72_RS08325 (I8N72_08325) fliH 1643541..1644296 (+) 756 WP_015388237.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=514468 I8N72_RS08295 WP_003154263.1 1638561..1639340(+) (codY) [Bacillus velezensis strain LBUM1082]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=514468 I8N72_RS08295 WP_003154263.1 1638561..1639340(+) (codY) [Bacillus velezensis strain LBUM1082]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471